View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2740_low_16 (Length: 250)
Name: NF2740_low_16
Description: NF2740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2740_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 22790526 - 22790285
Alignment:
| Q |
1 |
tacctcgagttgaactgtgctgaatcaagagttataggttgtagacttgtgtgtattcttcttattcctcaccaaattcaagcaa--tacgtaccatata |
98 |
Q |
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| T |
22790526 |
tacctcgagttgaactgtgctgaatcaagagttataggttgtagacttgtgtgtattcttcttattcctcaccaaattcaagcaagatacgtaccatata |
22790427 |
T |
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| Q |
99 |
tataatataaacacaatatagaagttgatttctagaaatgattgataaataatggtgtagaagaggatgacaaatgagaaaaatatattatgaaatgaaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22790426 |
tataatataaacacaatatagaagttgatttctagaaatgattgataaataatggtgtagaagaggatgacaaatgagaaaaatatattatgaaatgaaa |
22790327 |
T |
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| Q |
199 |
acacgaataattgtctaaaaggtttgggtttccatacctatg |
240 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22790326 |
acacgaataattgtctcaaaggtttgggtttccatacctatg |
22790285 |
T |
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