View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2740_low_17 (Length: 249)
Name: NF2740_low_17
Description: NF2740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2740_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 43002082 - 43001839
Alignment:
| Q |
1 |
tattcatgtataatgcctctaaaactggtatgatgttccaagtctttgtctctccctctttctcacattcctttctttgcaattaacagaagctaggacc |
100 |
Q |
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| T |
43002082 |
tattcatgtataatgcctctaaaactggtatgatgttccaagtctttgtctctccctctttctcacattcctttctttgcaattaacagaagctaggacc |
43001983 |
T |
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| Q |
101 |
aataacctttgaaaattctaaagaaactaattccatttctcttcatcaatatttgtttgcttcacaaaacttgaactagtaatcaactcattcacactag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43001982 |
aataacctttgaaaattctaaagaaactaattccatttctcttcatccatatttgttagcttcacaaaacttgaactagtaatcaactcattcacactag |
43001883 |
T |
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| Q |
201 |
tatttccatacgatgtcgcaactaatgatccactcctttgcttc |
244 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43001882 |
tatttctatacgatgtcgcaactaatgatccactcctttgcttc |
43001839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 5512425 - 5512182
Alignment:
| Q |
1 |
tattcatgtataatgcctctaaaactggtatgatgttccaagtctttgtctctccctctttctcacattcctttctttgcaattaacagaagctaggacc |
100 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| ||||| ||||| |
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| T |
5512425 |
tattcatttataatgcctctaaaactggcatgatgttccaagtctttgtctctgcctctttcccaaattcctttctttgcaattaacaaaagctgggacc |
5512326 |
T |
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| Q |
101 |
aataacctttgaaaattctaaagaaactaattccatttctcttcatcaatatttgtttgcttcacaaaacttgaactagtaatcaactcattcacactag |
200 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5512325 |
aataacctttgaaaattctcaagaaactggttccatttctcttcatccatatctgtcagcttcacaaaacttgaactagtaatcaactcattcacactag |
5512226 |
T |
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| Q |
201 |
tatttccatacgatgtcgcaactaatgatccactcctttgcttc |
244 |
Q |
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|||||||| | |||||| |||||||||||||||||||||||||| |
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| T |
5512225 |
tatttccagatgatgtcccaactaatgatccactcctttgcttc |
5512182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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