View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2740_low_22 (Length: 238)
Name: NF2740_low_22
Description: NF2740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2740_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31162140 - 31161920
Alignment:
| Q |
1 |
ttcacacatgacatgttttctttattcaaattagaaatacaataatgcatagaaagaccaaagttactgctcaaaccaccaccggatctacaagcaaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31162140 |
ttcacacatgacatgttttctttattcaaattagaaatacaataatgcatagaaagaccaaagttactgctcaaaccaccaccggatctacaagcaaagc |
31162041 |
T |
|
| Q |
101 |
tttaatgaatgttttcatttctccttcaggattcgtgtagttatcttcatctttataaaacacatcaataacacgtgagaggtttaaaatgcgtgtaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31162040 |
tttaatgaatgttttcatttctccttcaggattcgtgtagttatcttcatctttataaaacacatcaataacacgtgagaggtttaaaatgcgtgtaaga |
31161941 |
T |
|
| Q |
201 |
aaaggcattggaatttctgtt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31161940 |
aaaggcattggaatttctgtt |
31161920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 31201787 - 31201654
Alignment:
| Q |
80 |
caccggatctacaagcaaagctttaatgaatgttttcatttctccttcaggattcgtgtagttatcttcatctttataaaacacatcaataacacgtgag |
179 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||||||| ||||| |||| |||||| |
|
|
| T |
31201787 |
caccggctcaacaagcaatgctttgatgaatgttttcatttctcctgcaggatgagtgaagttatctttatctttataaacgacatccataaaacgtgac |
31201688 |
T |
|
| Q |
180 |
aggtttaaaatgcgtgtaagaaaaggcattggaa |
213 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||| |
|
|
| T |
31201687 |
agatttagaatgcgtgtaagaaaaggcattggaa |
31201654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 41349278 - 41349404
Alignment:
| Q |
84 |
ggatctacaagcaaagctttaatgaatgttttcatttctccttcaggattcgtgtagttatcttcatctttataaaacacatcaataacacgtgagaggt |
183 |
Q |
| |
|
||||| ||||| |||| ||||||||||| ||||||||||||||||||| || ||||||||| ||||||||||| |||||| || | |||||| | || |
|
|
| T |
41349278 |
ggatcaacaagtaaagatttaatgaatgacttcatttctccttcaggatgtgtaaagttatctttatctttataaaccacatccatgaaacgtgataagt |
41349377 |
T |
|
| Q |
184 |
ttaaaatgcgtgtaagaaaaggcattg |
210 |
Q |
| |
|
||| |||||| | ||||||||||||| |
|
|
| T |
41349378 |
ttagaatgcgcatcagaaaaggcattg |
41349404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 17183384 - 17183251
Alignment:
| Q |
80 |
caccggatctacaagcaaagctttaatgaatgttttcatttctccttcaggattcgtgtagttatcttcatctttataaaacacatcaataacacgtgag |
179 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||| || || ||||||||| ||||||| ||||||| ||||| |||| ||| ||| |
|
|
| T |
17183384 |
caccggatctacaagcaaagctttaatgtatgtcttcatttctcctttagaatgcgtgtagttgtcttcatgcttataaattacatccataaaacgcgag |
17183285 |
T |
|
| Q |
180 |
aggtttaaaatgcgtgtaagaaaaggcattggaa |
213 |
Q |
| |
|
|| || | |||||| || |||||| || |||||| |
|
|
| T |
17183284 |
agattgacaatgcgagttagaaaaagcgttggaa |
17183251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 25794466 - 25794356
Alignment:
| Q |
84 |
ggatctacaagcaaagctttaatgaatgttttcatttctccttcaggattcgtgtagttatcttcatctttataaaacacatcaataacacgtgagaggt |
183 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||| ||||||||||| || || |||| ||| || |||| |
|
|
| T |
25794466 |
ggatctacaagcaaagctttaatgaatgtcttcatttctccttcagtgtgagtgaagttatctttatctttataaactacgtccataaaacgcgataggt |
25794367 |
T |
|
| Q |
184 |
ttaaaatgcgt |
194 |
Q |
| |
|
|||||||||| |
|
|
| T |
25794366 |
ctaaaatgcgt |
25794356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 4314462 - 4314585
Alignment:
| Q |
90 |
acaagcaaagctttaatgaatgttttcatttctccttcaggattcgtgtagttatcttcatctttataaaacacatcaataacacgtgagaggtttaaaa |
189 |
Q |
| |
|
||||| |||| ||| |||||||| |||||||||||||| |||| ||| ||||||||| ||| ||||||| |||||| || | ||||| | |||||||| |
|
|
| T |
4314462 |
acaagtaaagatttgatgaatgtcttcatttctccttctggatgagtgaagttatctttatcattataaaccacatccatcaagcgtgataagtttaaaa |
4314561 |
T |
|
| Q |
190 |
tgcgtgtaagaaaaggcattggaa |
213 |
Q |
| |
|
||| || | |||||||||||||| |
|
|
| T |
4314562 |
tgcacgtcaaaaaaggcattggaa |
4314585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 25538085 - 25538157
Alignment:
| Q |
53 |
aaagaccaaagttactgctcaaaccaccaccggatctacaagcaaagctttaatgaatgttttcatttctcct |
125 |
Q |
| |
|
|||||| |||| || |||||||||| ||| |||| ||||||||| |||| |||| |||| |||||||||||| |
|
|
| T |
25538085 |
aaagactaaagataatgctcaaaccgacactggatatacaagcaatgcttcaatgtatgtcttcatttctcct |
25538157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University