View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2740_low_5 (Length: 362)
Name: NF2740_low_5
Description: NF2740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2740_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 29740804 - 29741094
Alignment:
| Q |
13 |
aatatggttcatctccccataagttaacgttgatgactctcataataccactactcactcatcgacttgtagtggtttaatccgtgattattttgccaac |
112 |
Q |
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| T |
29740804 |
aatatggttcatctccccataagttaacgttgatgactctcataataccactactcactcatcgacttgtagtggtttaatccgtgattattttgctaac |
29740903 |
T |
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| Q |
113 |
tctatcaaatgattctactgctatttttgttgagttttagggccttaacttaggtcttaaactcgccattgatcaaggacaaaaattagaggattcttac |
212 |
Q |
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| T |
29740904 |
tctatcaaatgattctactgctatttttgttgagttttagggccttaacttaggtcttaaactcgccattgatcaaggacaaaaattagaggattcttac |
29741003 |
T |
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| Q |
213 |
cgtttatgtccaacaaaaatcatccgtgccatgacgaagaggtgtctaccattattgctttacgtaattgcaagtagccacatgccacccc |
303 |
Q |
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| T |
29741004 |
cgtttatgtccaacaaaaatcatccgtgccatgacgaagaggtgtctaccattattgctttacgtaattgcaagtagccacatgccacccc |
29741094 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 32496798 - 32496848
Alignment:
| Q |
312 |
ctagtacttccattattctagagatggtgtggtgaagaaatctcaatatac |
362 |
Q |
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| T |
32496798 |
ctagtacatccattattctagagatgttgtggtgaagaaatctcaatatac |
32496848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 17814477 - 17814398
Alignment:
| Q |
47 |
gactctcataataccactactcactcatcgacttgtagtggtttaatccgtgattattttgccaactctatcaaatgatt |
126 |
Q |
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| T |
17814477 |
gactctcataatactactactcgttcatcggcttgcaatggcttaattcgtgatttttttggcaactttatcaaaggatt |
17814398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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