View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2741_high_3 (Length: 247)
Name: NF2741_high_3
Description: NF2741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2741_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 3642729 - 3642495
Alignment:
| Q |
3 |
tttttatgcatgtagtcatgttggattggttgaagaggctcaaagacaatttaacctgataacaaagaggtatggtttagtgccagaaagagagcgttat |
102 |
Q |
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| T |
3642729 |
tttttatgcatgtagtcatgttggattggttgaagaggctcaaagacaatttaacctgataacaaagaggtatggtatagtgccagaaagagagcgttat |
3642630 |
T |
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| Q |
103 |
gattcacggttgatcttttgattcgggcaggtaatttccaagagacggaaaaactaatgaagacaatgtcaataaaaccaaatattgccatattcggtgc |
202 |
Q |
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| T |
3642629 |
gattcacggttgatcttttgattcgggcaggtaatttccaagagacggaaaaactaatgaagacaatgtcaataaaaccaaatattgccatattcggtgc |
3642530 |
T |
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| Q |
203 |
tcttttaaatggtttccagattcatgaaaacgtct |
237 |
Q |
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| T |
3642529 |
tcttttaaatggtttccagattcatgaaaacgtct |
3642495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 9807266 - 9807041
Alignment:
| Q |
9 |
tgcatgtagtcatgttggattggttgaagaggctcaaagacaatttaacctgataacaaagaggtatggtttagtgccagaaagagagcgttatgattc- |
107 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||| || |||||||| |||||| || |||| |||| ||||| ||| || |
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| T |
9807266 |
tgcatgtagtcatgttggattggtcgaagaggctcaaaaacaatttaaccttatgacaaagagttatggtatactgccggaaaaagagcactatagttgt |
9807167 |
T |
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| Q |
108 |
acggttgatcttttgattcgggcaggtaatttccaagagacggaaaaactaatgaagacaatgtcaataaaaccaaatattgccatattcggtgctcttt |
207 |
Q |
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| T |
9807166 |
atggttgatcttttgagtcgggcaggtcattttagagaggcggaaaaactaatggagacaatgtcaatacgaccaaatattgccatatggggtgctcttt |
9807067 |
T |
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| Q |
208 |
taaatggtttccagattcatgaaaac |
233 |
Q |
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| T |
9807066 |
taaatggttgccagattcatgaaaac |
9807041 |
T |
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