View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2741_low_1 (Length: 540)
Name: NF2741_low_1
Description: NF2741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2741_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 519
Target Start/End: Complemental strand, 10593310 - 10592811
Alignment:
| Q |
12 |
ataggttgggaaaacacaaaccggtaactagccaacttgtttcttgagaaatggtctgtgtatccatgtccctctttcactatttctgtttattttgtca |
111 |
Q |
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| T |
10593310 |
ataggttgggaaaacacaaaccggtaactagccaacttgtttcttgagaaatggtctgtgtatccatctccctcttt----atttcagtttattttgtca |
10593215 |
T |
|
| Q |
112 |
tgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattggtttcattttattcaatacaaatga-ttttgatgatatt |
210 |
Q |
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| T |
10593214 |
tgtatctttaatttttaatttagactagaatacacggacattgtagggattcgtataattaatttcattttattgaatacaaatgatttttgatgatatt |
10593115 |
T |
|
| Q |
211 |
tgagactaatttcatgacaaaaagttaccactatatcatgttggtgttggatttactaatgttccacatcagacacaatacaatataacacta----tat |
306 |
Q |
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| T |
10593114 |
tgagactaatttcatgacaaaaagttaccattatatca------tgttggatttactaatgttccacatcagacacaatacaatataacactatgtttat |
10593021 |
T |
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| Q |
307 |
aattgtttgcaccgtcaattttaagcagaaagactttggagagactctagattgtctataagaatttacacaatctagagtcattcaatctttttagttt |
406 |
Q |
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| T |
10593020 |
aattgtttgcactgtcaattttaagtag---gaatttggagagactctaggttgtctataagaattt--acaatctagagcccttcaaactttttagttt |
10592926 |
T |
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| Q |
407 |
gggnnnnnnnttcttcaaattacat-ttttctattttgtgtactgaagaagaa-gttcgaagtatataataaaaaacatgccaaaccatgaaatcataac |
504 |
Q |
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| T |
10592925 |
gggaagaaaattcttcaaattatatgttttttattttgtgtgctgaagaagaaggttcgaagaatcaaataaaaaatatgtcaaactatgaaatcataac |
10592826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 38271740 - 38271892
Alignment:
| Q |
100 |
tttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattggtttcattttattcaatacaaatgatt |
199 |
Q |
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| T |
38271740 |
tttattttgtcatgtatctttaattctt--tttagactagagttcaccggcattataaggattcatgtaattggttttattttattcaatacaaatgatt |
38271837 |
T |
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| Q |
200 |
ttgatgatatttgagactaatttcatgacaaaaagttaccactatatcatgttgg |
254 |
Q |
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| T |
38271838 |
ttgatgatgtttgagacaaatttcatgacagaaagtgactcctatatcatgttgg |
38271892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 100 - 252
Target Start/End: Original strand, 38273423 - 38273573
Alignment:
| Q |
100 |
tttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattggtttcattttattcaatacaaatgatt |
199 |
Q |
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| T |
38273423 |
tttattttgtcatgtatctttaattatt--tttagcctagaatgcacagacattatagagattcgtataattggtttcattttattcaatacaaatgatt |
38273520 |
T |
|
| Q |
200 |
ttgatgatatttgagactaatttcatgacaaaaagttaccactatatcatgtt |
252 |
Q |
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||| |||| |||||| | |||||||||||| || || || ||||||||||||| |
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| T |
38273521 |
ttggtgatgtttgaggcaaatttcatgacagaacgtgactactatatcatgtt |
38273573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 38277976 - 38278078
Alignment:
| Q |
130 |
tttagactagaatacacggacattgtagggattc----atataattggtttcattttattca--atacaaatgattttgatgatatttgagactaatttc |
223 |
Q |
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| T |
38277976 |
tttagactagaatacacggacattatagggattcatatatataatttgtttcattttattcaatatacaaatgattttgatgacgtttgagacaaatttc |
38278075 |
T |
|
| Q |
224 |
atg |
226 |
Q |
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||| |
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| T |
38278076 |
atg |
38278078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 38270557 - 38270617
Alignment:
| Q |
194 |
atgattttgatgatatttgagactaatttcatgacaaaaagttaccactatatcatgttgg |
254 |
Q |
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|||||||||||||| |||||||| |||||||||||| ||||| || ||||||||||||||| |
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| T |
38270557 |
atgattttgatgatgtttgagacaaatttcatgacagaaagtgactactatatcatgttgg |
38270617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 38276852 - 38276936
Alignment:
| Q |
88 |
tcactatttctgtttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattggt |
174 |
Q |
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| T |
38276852 |
tcactatttctttttattttgtcatgtatatttaattatt--tttagatttgaatacatggacattatatggattcatatgattggt |
38276936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 38278953 - 38279052
Alignment:
| Q |
72 |
tatccatgtccctctttcactatttctgtttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataatt |
171 |
Q |
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| T |
38278953 |
tatcaatgtctctcctttactatttctttttattttatcatgtatcttttattatt--tttagaatagaatacaccaacgtcatagggattcatataatt |
38279050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 32119955 - 32120012
Alignment:
| Q |
70 |
tgtatccatgtccctctttcactatttctgtttattttgtcatgtatctttaattttt |
127 |
Q |
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| T |
32119955 |
tgtatccatgtctctctttcactatttctttttattttgtcatgtatctttaattttt |
32120012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 26577116 - 26577237
Alignment:
| Q |
95 |
ttctgtttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatat--aattggtttcattttattcaataca |
192 |
Q |
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|||| |||||||||||||| |||||||||| || ||||||||| ||||||| |||| || |||||| ||| |||||| ||||||| |||||||||| |
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| T |
26577116 |
ttctttttattttgtcatgcatctttaattatt--tttagactaaaatacacatacatcatatggattcttatttaattggcttcatttgattcaataca |
26577213 |
T |
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| Q |
193 |
aatgattttgatgatatttgagac |
216 |
Q |
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| T |
26577214 |
attgattttgatgatagttgagac |
26577237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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