View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2741_low_2 (Length: 387)
Name: NF2741_low_2
Description: NF2741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2741_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 27728746 - 27728385
Alignment:
| Q |
11 |
cacagaagaggaatgcaannnnnnncacttcatggcatgtgctatcccaatccatataatacgatacaagagcatgcgatattccaagagcaaaaagtgg |
110 |
Q |
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| T |
27728746 |
cacagaagaggaatgcaatttttttcacttcatggcatgtgctatcccaatccatataatacgatacaagagcatgcgatattccaagagcaaaaagtgg |
27728647 |
T |
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| Q |
111 |
cataagagcaccagtagtaaaagcagctaaggttccaaaaactccataagaccaataaggaccaatcattgaatataatcttattaatgaaacatgcctt |
210 |
Q |
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| T |
27728646 |
cataagagcaccagtagtaaaagcagctaaggttccaaaaactccataagaccaataaggaccaatcattgaatataatcttattaatgaaacatgcctt |
27728547 |
T |
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| Q |
211 |
ggcttttcaacacttcttggttcatcagcaagtgcatggccaatagagcttctatctgaatgaaaactaccaccaatggttgctgtatgggatatttctg |
310 |
Q |
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| T |
27728546 |
ggctttacaacacttcttggttcatcagcaagtgcatggccaatagagcttctatctgaatgaaaactaccaccaatagttgctgcatgggatatttctg |
27728447 |
T |
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| Q |
311 |
ctgagttctttatgctacaattaaaaacatgtatatacgtaagtttgataggaggaattgtg |
372 |
Q |
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| T |
27728446 |
ctgagttctttaagctacaattaaaaacatgtatatacataagtttgataggaggaattgtg |
27728385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 207
Target Start/End: Complemental strand, 12520780 - 12520628
Alignment:
| Q |
55 |
tcccaatccatataatacgatacaagagcatgcgatattccaagagcaaaaagtggcataagagcaccagtagtaaaagcagctaaggttccaaaaactc |
154 |
Q |
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| T |
12520780 |
tcccaatccatataatatgagacaagagcatgagagattcctagtgcaaaaagtggcatttgtgctccagcaacaaatgcacataaggtcccaaaaaatc |
12520681 |
T |
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| Q |
155 |
cataagaccaataaggaccaatcattgaatataatcttattaatgaaacatgc |
207 |
Q |
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| T |
12520680 |
cataaggccagtcaggaccaatcatagaatatagtctttttgctgaaacatgc |
12520628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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