View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2741_low_3 (Length: 266)
Name: NF2741_low_3
Description: NF2741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2741_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 10593375 - 10593630
Alignment:
| Q |
1 |
atgaaactgattaataggtattctcggccaaagttgaacattgctgctgctacggaatggttataaatgtttcagtttagacatgtcgtctttgatcaca |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10593375 |
atgaaactgattaatgggtattctcggccaaagttgaacattgctgctgctacggaatggttatatatgtttcagtttagacatgtcgtctttgatcaca |
10593474 |
T |
|
| Q |
101 |
tttgcctttactttgatattcttgatatcgattccacctggaatcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10593475 |
ttttcctttactttgatattcttgatatcgattccacctggaatcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtg |
10593574 |
T |
|
| Q |
201 |
tctcagtgtaatttttctgatctttgaaggcattgtgggtctagctgttacctatg |
256 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
10593575 |
tctcagtgtaatttttttgatcttttaaggcattgtgggtctagctgttacctatg |
10593630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 14375543 - 14375686
Alignment:
| Q |
1 |
atgaaactgattaataggtattctcggccaaagttgaacattgctgctgctacggaatggttataaatgtttcagtttagacatgtcgtctttgatcaca |
100 |
Q |
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|||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||| |||| ||||||||||||| |
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| T |
14375543 |
atgaaactgattgatgggtattctcggccaaagttcaacattgctgctgctatggaatggttat----gtttccgtttagatatgttgtctttgatcaca |
14375638 |
T |
|
| Q |
101 |
tttgcctttactttgatattcttgatatcgattccacctggaatcata |
148 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14375639 |
tttgccttttctttgatattcttgatatcgattccacctggaatcata |
14375686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 41436466 - 41436323
Alignment:
| Q |
1 |
atgaaactgattaataggtattctcggccaaagttgaacattgctgctgctacggaatggttataaatgtttcagtttagacatgtcgtctttgatcaca |
100 |
Q |
| |
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|||||||||| | || ||||||||||||||||||| || |||| |||||||| ||||||||||| | ||| | ||||| |||| ||||| |||||| |
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| T |
41436466 |
atgaaactgactgatgggtattctcggccaaagttcaatattgttgctgctatggaatggttat----gcttccgcttagatatgttgtcttccatcaca |
41436371 |
T |
|
| Q |
101 |
tttgcctttactttgatattcttgatatcgattccacctggaatcata |
148 |
Q |
| |
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||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
41436370 |
tttgccttttccttgatattcttgatatcgattccacctggaatcata |
41436323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 41449679 - 41449536
Alignment:
| Q |
1 |
atgaaactgattaataggtattctcggccaaagttgaacattgctgctgctacggaatggttataaatgtttcagtttagacatgtcgtctttgatcaca |
100 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||| || ||||||||||||| ||||||||||| | ||| | ||||| |||| ||||| ||||| |
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| T |
41449679 |
atgaaactgactgatgggtattctcggccaaagttcaatattgctgctgctatggaatggttat----gcttccgcttagatatgttgtcttccatcacg |
41449584 |
T |
|
| Q |
101 |
tttgcctttactttgatattcttgatatcgattccacctggaatcata |
148 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
41449583 |
tttgccttttccttgatattcttgatatcgattccacctggaatcata |
41449536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 14238595 - 14238453
Alignment:
| Q |
1 |
atgaaactgattaataggtattctcggccaaagttgaacattgctgctgctacggaatggttataaatgtttcagtttagacatgtcgtctttgatcaca |
100 |
Q |
| |
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|||||||||| | || |||||||||||||||| || |||||| ||||||||| ||||||||| || ||| | ||||| |||| ||||| |||| | |
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| T |
14238595 |
atgaaactgactgatgggtattctcggccaaatttcaacatttctgctgctatggaatggtt----atctttacgcttagatatgttgtcttccatcata |
14238500 |
T |
|
| Q |
101 |
tttgcctttactttgatattcttgatatcgattccacctggaatcat |
147 |
Q |
| |
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||||||||| | ||| |||||||||||||||||||||||||||||| |
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| T |
14238499 |
tttgccttttccttggcattcttgatatcgattccacctggaatcat |
14238453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 14376914 - 14376964
Alignment:
| Q |
206 |
gtgtaatttttctgatctttgaaggcattgtgggtctagctgttacctatg |
256 |
Q |
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|||| ||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
14376914 |
gtgtcatttttctgatttttgaaggcattgctggtctagctgttacctatg |
14376964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 41436230 - 41436186
Alignment:
| Q |
212 |
tttttctgatctttgaaggcattgtgggtctagctgttacctatg |
256 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||||||||||| |
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| T |
41436230 |
ttttcctgatttttgaaggcattgctggtctagctgttacctatg |
41436186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 32119247 - 32119103
Alignment:
| Q |
1 |
atgaaactgattaataggtattctcggccaaagttgaacattgctgctgctacggaatggttataaatgtttcagtttagacatgtcgtctttgatcaca |
100 |
Q |
| |
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||||| ||||||||| | |||||| ||||||||| |||||||||||||||| ||||||||||| || || || |||| |||| ||||||||||| | |
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| T |
32119247 |
atgaacctgattaatggatattctttgccaaagttcaacattgctgctgctatggaatggttat----gtctccgtatagatatgttgtctttgatcaga |
32119152 |
T |
|
| Q |
101 |
tttgcctttactttgatattcttgatatc-gattccacctggaatcata |
148 |
Q |
| |
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|||| |||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
32119151 |
tttgtcttttctttgatattcttgatatcagaatccacctggaatcata |
32119103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 32119075 - 32118988
Alignment:
| Q |
143 |
atcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtgtctc---agtgtaatttttctgatctttga |
227 |
Q |
| |
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|||||||||| ||||||| |||||| | |||||| ||| ||||| ||||||||||| |||| ||||| ||||||||||| ||||| |
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| T |
32119075 |
atcatatatcaatcaaaatttactctgcttgtgtattgagaagttaggcataattgtctctccttagtgtcatttttctgatttttga |
32118988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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