View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2741_low_4 (Length: 249)
Name: NF2741_low_4
Description: NF2741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2741_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 9667864 - 9667781
Alignment:
| Q |
150 |
cccccttagctttggaaaaacataagccatttctcaaagtccatcttctagttctttaagcccattcaattctaaatccatattc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9667864 |
cccccttagctttggaaaaacataagccatttctcatagtccatcttccagttctttaagcccattcaattc-caatccatattc |
9667781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 9668006 - 9667927
Alignment:
| Q |
9 |
aatttgtttcataagtacaacttagatggtaaaagaccgcaaggactatt-acgatataaagaataagagagaataacac |
87 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
9668006 |
aatttgtttcatacgtacaatttagatggtaaaagaccgtaaggactattaacaatataaagaataagagagaataacac |
9667927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University