View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2741_low_6 (Length: 243)
Name: NF2741_low_6
Description: NF2741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2741_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3642769 - 3642995
Alignment:
| Q |
1 |
tatcctcttgcattatttgaaacatactgaatgcttcatttccatgatcatgtatggctaaaccattaatcatgctagtccacatcaccacatctttctt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3642769 |
tatccacttgcattatttgaaacatactgaatgcttcatttccatgatcatgtatggctaaaccattaatcatgctagtccacatcaccacatctttctt |
3642868 |
T |
|
| Q |
101 |
ttccaaactcttaaaaatattttgtgcactccctagttcaccattcttggcatacatgtccaaaagagcagttgccaatgaaatatcttttgcagcattg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3642869 |
ttccaaactcttaaaaata--ttgtgcacttcctagttcaccattcttggcatacatgtccaaaagagcagttgccaatgaaatatcttttgcagcattg |
3642966 |
T |
|
| Q |
201 |
cttttcaatagacaaccatgaacagtttt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3642967 |
cttttcaatagacaaccatgaacagtttt |
3642995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 9807310 - 9807540
Alignment:
| Q |
1 |
tatcctcttgcattatttgaaacatactgaatgcttcatttccatgatcatgtatggctaaaccattaatcatgctagtccacatcaccacatctttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||| ||||| || || |
|
|
| T |
9807310 |
tatcctcttgcattatttgaaacaaactcaatgcttcatttccatgaccatgtatggctaaagcatttatcatactagtccacatcactacatccttttt |
9807409 |
T |
|
| Q |
101 |
ttccaaac---tcttaaaaatattttgtgcactccctagttcaccattcttggcatacatgtccaaaagagcagttgccaatgaaatatcttttgcagca |
197 |
Q |
| |
|
|||||||| | |||||||| ||||| ||||| |||| ||||||||| ||||||||||| ||||||||||||||||| | | |||||||||||| |
|
|
| T |
9807410 |
ttccaaactattattaaaaatcttttgcgcacttcctaattcaccatttttggcatacatatccaaaagagcagttgcaagggcaatatcttttgccatg |
9807509 |
T |
|
| Q |
198 |
ttgcttttcaatagacaaccatgaacagttt |
228 |
Q |
| |
|
||||||||||||||| || ||||||| |||| |
|
|
| T |
9807510 |
ttgcttttcaatagataagcatgaaccgttt |
9807540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 10761021 - 10761147
Alignment:
| Q |
38 |
atttccatgatcatgtatggctaaaccattaatcatgctagtccacatcaccacatctttcttttccaaac---tcttaaaaatattttgtgcactccct |
134 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||| |||||||||||||| |||||||||||| | |||| | ||||||| ||| ||||| | ||| |
|
|
| T |
10761021 |
atttccatgtgcttgtatggctaaaccatta-tcattctagtccacatcactacatctttctttcctaaacaattattaaaaacctttagtgcatttcct |
10761119 |
T |
|
| Q |
135 |
agttcaccattcttggcatacatgtcca |
162 |
Q |
| |
|
| |||||||||||| |||||||| |||| |
|
|
| T |
10761120 |
aattcaccattcttagcatacatttcca |
10761147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University