View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_high_11 (Length: 464)
Name: NF2742_high_11
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 35697031 - 35696587
Alignment:
| Q |
1 |
ggtgaaggtccaacatccgaacacaacgatccattcgcgttcacgatcacacctttcttcccagtaggaacactaatttcagactcacattcaccaccgt |
100 |
Q |
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| T |
35697031 |
ggtgaaggtccaacatccgaacacaacgatccattcgcgttcacgatcacacctttcttcccagtaggaacactaatttcagactcacattcaccaccgt |
35696932 |
T |
|
| Q |
101 |
aaccgttttttccattaggattataaacataatcattaatcgtcgaatcannnnnnncgctttgtgatcgttgaagcgtcatcatatgcttggcatcaca |
200 |
Q |
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| T |
35696931 |
aaccgttttttccattaggattataaacataatcattaatcgtcgaatcatttttttcgctttgtgatcgttgaagcgtcatcatatgcttggcatcaca |
35696832 |
T |
|
| Q |
201 |
attactgttattgtcatagttttgattctgtttgttaggcttcgttatatcataatattcaacagccgaagaactaagctccgaatacatcggcatgctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35696831 |
attactgttattgtcatagttttgattctgtttgttaggcttcgttatatcataatattcaacagccgaagaactaagctccgaatacatcggcatgctt |
35696732 |
T |
|
| Q |
301 |
ctcatcgtagcatcgacaacattaacaccaatgttaagaatcccttgtggacgaccagaaggtcgacgaacctgcaaggcaacgaaacgaatcttggatt |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35696731 |
ctcatcgtagcatcaacaacattaacaccaatgttaagaatcccttgtggacgaccagaaggtcgacgaacctgcaaggcaacgaaacgaatcttggatt |
35696632 |
T |
|
| Q |
401 |
ttctgttacgaggtaaaagattgttgagatgaacagcgacagttc |
445 |
Q |
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| T |
35696631 |
ttctgttacgaggtaaaagattgttgagatgaacagcgacagttc |
35696587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 356
Target Start/End: Original strand, 47725280 - 47725359
Alignment:
| Q |
277 |
agctccgaatacatcggcatgcttctcatcgtagcatcga-caacattaacaccaatgttaagaatcccttgtggacgacc |
356 |
Q |
| |
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||||||||||| | ||||||||||||||||| ||||| |||| | |||||| |||||||||||||||||||||||||| |
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| T |
47725280 |
agctccgaataaagtggcatgcttctcatcgtgctatcgagcaacgt-aacaccgatgttaagaatcccttgtggacgacc |
47725359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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