View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_high_12 (Length: 446)
Name: NF2742_high_12
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_high_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 298766 - 298324
Alignment:
| Q |
16 |
aatgcctaatttgtcccgtgtaacacacctaaatctgatactatgtgggatatatattgccttggctttgcacttcatttaaagtatgcttaattctact |
115 |
Q |
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| T |
298766 |
aatgcctaatttgtcccgtgtaacacacctaaatctgatactatgtgggatatatattggcttggctttgcacttcatttaaagtatgcttaattctact |
298667 |
T |
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| Q |
116 |
tttggcacatggtgtgattttgtccctttgnnnnnnnagcttctctttataattttgtagccccttccaatttcctcttaaattttatg----------- |
204 |
Q |
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| T |
298666 |
tttggcacatggtgtgattttgtccctttgtttttttagcttctctttataattttgtagccccttccaatttcctcttaaattttatgctaatgtatta |
298567 |
T |
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| Q |
205 |
--tttcatcaatttttgaggtggcaactaactctcata-gccaacatgcatggtttctctttaaaataaaaatgcaaaaatactcttctacatttaagaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
298566 |
tgtttcatcaatttttgaggtggcaactaactctcataagccaacatgcatggtttctctttaaaataaaaatgcaaaaatactcttctacatttaagaa |
298467 |
T |
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| Q |
302 |
tgaaatccctaattagagtttcaaacttttaatcatttttaattttaaagaaaaattacaccgcgactatgattgttggaatggagactaacaaatcaca |
401 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
298466 |
tgaagtccctaattagagtttcaaacttttaatcatttttaattttaaagaaaaattacac--cgactatgattgtttgaatggagactaacaaatcaca |
298369 |
T |
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| Q |
402 |
accgagatgaacataagtagtcataacgacatgtttctgaacaca |
446 |
Q |
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| T |
298368 |
accgagaagaacataagtagtcataatgacatgtttctgaacaca |
298324 |
T |
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