View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2742_high_13 (Length: 405)

Name: NF2742_high_13
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2742_high_13
NF2742_high_13
[»] chr7 (5 HSPs)
chr7 (11-391)||(24887769-24888149)
chr7 (125-255)||(44235464-44235594)
chr7 (67-194)||(12473526-12473654)
chr7 (198-255)||(12473107-12473164)
chr7 (86-178)||(24314308-24314401)
[»] chr2 (5 HSPs)
chr2 (84-255)||(27679007-27679179)
chr2 (81-120)||(36626010-36626049)
chr2 (146-213)||(44810056-44810123)
chr2 (132-170)||(35817077-35817115)
chr2 (148-232)||(31062943-31063027)
[»] chr3 (7 HSPs)
chr3 (116-236)||(38684754-38684874)
chr3 (84-214)||(37083781-37083912)
chr3 (136-228)||(9198185-9198277)
chr3 (70-226)||(36879046-36879202)
chr3 (167-255)||(1384762-1384850)
chr3 (136-214)||(32326158-32326236)
chr3 (71-111)||(7515268-7515308)
[»] chr8 (3 HSPs)
chr8 (97-220)||(24523833-24523956)
chr8 (84-225)||(32467766-32467907)
chr8 (116-214)||(41470053-41470151)
[»] chr5 (8 HSPs)
chr5 (70-255)||(6462365-6462552)
chr5 (138-214)||(16869957-16870033)
chr5 (69-172)||(22028627-22028731)
chr5 (115-233)||(4283066-4283184)
chr5 (198-236)||(13838861-13838899)
chr5 (84-274)||(17259386-17259576)
chr5 (74-178)||(3540775-3540879)
chr5 (93-225)||(10350439-10350571)
[»] chr4 (10 HSPs)
chr4 (70-214)||(3535087-3535233)
chr4 (137-214)||(21501605-21501682)
chr4 (126-211)||(39276332-39276417)
chr4 (84-207)||(23051682-23051806)
chr4 (85-120)||(23686387-23686422)
chr4 (146-193)||(41173733-41173780)
chr4 (145-226)||(5645998-5646080)
chr4 (183-236)||(22347424-22347477)
chr4 (138-218)||(26552196-26552276)
chr4 (208-236)||(47987101-47987129)
[»] chr1 (9 HSPs)
chr1 (140-214)||(35926678-35926752)
chr1 (93-160)||(9496747-9496814)
chr1 (70-120)||(5951951-5952001)
chr1 (116-220)||(21516659-21516763)
chr1 (116-210)||(1415703-1415797)
chr1 (117-231)||(20791959-20792072)
chr1 (146-255)||(42747604-42747713)
chr1 (183-235)||(10518264-10518316)
chr1 (166-214)||(15942493-15942541)
[»] scaffold0040 (1 HSPs)
scaffold0040 (70-214)||(49911-50056)
[»] scaffold0027 (1 HSPs)
scaffold0027 (182-236)||(7952-8006)
[»] scaffold0010 (1 HSPs)
scaffold0010 (117-178)||(166560-166621)
[»] chr6 (1 HSPs)
chr6 (91-213)||(9749960-9750082)
[»] scaffold0536 (1 HSPs)
scaffold0536 (86-178)||(4325-4420)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 391
Target Start/End: Original strand, 24887769 - 24888149
Alignment:
Q  11 catagggtctgtttggcaagtaacatatttaagttcttnnnnnnntaaaaggtaatatatttgagcttatagtttatagtttatgtcttataagtttatt 110  Q
    |||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24887769 catagggtctgtttggcaagtaacatatttgagttcttaaaaaaataaaaggtaatatatttgagcttatagtttatagtttatgtcttataagtttatt 24887868  T
Q  111 tgattaaaaagatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagctt 210  Q
    ||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24887869 tgattaaaaaggtatgtttgataatcgtcactttttgacgagcttataacctatttttactagtttatcgtgttttttaataagcggattcaagtagctt 24887968  T
Q  211 atagtttaaaacttataacttatcatctattatgtcaattttacctttgttgctttaattgaaagnnnnnnnttcaatatatttgtttacgtcatttcat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  24887969 atagtttaaaacttataacttatcatctattatgtcaattttacctttgttgctttaattgaaagaaaaaaaatcaatatatttgtttacgtcatttcat 24888068  T
Q  311 acttataagctatttcaaccaccctcttattttaacaaacactacaaagttaatcagctaatttgtcccctatcaactata 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24888069 acttataagctatttcaaccaccctcttattttaacaaacactacaaagttaatcagctaatttgtcacctatcaactata 24888149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 255
Target Start/End: Complemental strand, 44235594 - 44235464
Alignment:
Q  125 tgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaactt 224  Q
    |||||| |||| |||||||| ||| ||||||||| | |||||| |  || |||| ||||||||| |||||   ||||||||| | ||||  ||||| |||    
T  44235594 tgtttggtaattgtcactttctcaagagcttatagcttattttaatgagcttatagtgttttttgataagttaattcaagtaacatataaattaaagctt 44235495  T
Q  225 ataacttatcatctattatgtcaattttacc 255  Q
    |||||||||| ||| |||| | |||||||||    
T  44235494 ataacttatcctcttttatctgaattttacc 44235464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 12473654 - 12473526
Alignment:
Q  67 atatttgagcttatagtttatagtttatgtcttataagtttatttga-ttaaaaagatctgtttgataatcgtcactttttcacgagcttataacctatt 165  Q
    |||||||||||||||  |||||| ||||| |||||||| | |||||| | ||||||| | ||||| ||| ||| | ||| ||| ||||||||| | ||||    
T  12473654 atatttgagcttataacttatagcttatggcttataagctcatttgactaaaaaagacccgtttggtaaccgtaattttctcatgagcttatagcttatt 12473555  T
Q  166 tttactagtttatcgtgttttttaataag 194  Q
    |||||||| || | | ||||||| |||||    
T  12473554 tttactagcttgtagcgtttttttataag 12473526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 12473164 - 12473107
Alignment:
Q  198 attcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc 255  Q
    ||||||||||||||||| ||||| ||| || |||||||| | |||| |||||||||||    
T  12473164 attcaagtagcttatagcttaaagcttgtagcttatcattttttatctcaattttacc 12473107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 24314401 - 24314308
Alignment:
Q  86 atagtttatgtcttataagtttatttgattaaaaagatc-tgtttgataatcgtcactttttcacgagcttataacctatttttactagtttat 178  Q
    |||| |||||||||| ||  |||||||| |||||| ||| |||||| ||||   |||||| |||||| |||||| | |||||||||||||||||    
T  24314401 atagcttatgtcttagaaacttatttgactaaaaaaatcatgtttggtaatgaccactttatcacgaacttatatcttatttttactagtttat 24314308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 27679007 - 27679179
Alignment:
Q  84 ttatagtttatgtcttataagtttatttgattaaaaa-gatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtg 182  Q
    |||||| |||||||||||||| | ||||||  ||||| || |||||  ||||  ||||| || ||||||||||||| | |||||||||||| |||| | |    
T  27679007 ttatagcttatgtcttataagctcatttgagcaaaaaagacctgttcaataacggtcacattctcacgagcttatagcttatttttactagcttatagcg 27679106  T
Q  183 ttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc 255  Q
    |||||||||||||  ||||||||||||||| | ||||| |||||| ||||||||   |||| |||||||||||    
T  27679107 ttttttaataagctaattcaagtagcttatggcttaaagcttatagcttatcattatttatctcaattttacc 27679179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 36626049 - 36626010
Alignment:
Q  81 agtttatagtttatgtcttataagtttatttgattaaaaa 120  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  36626049 agtttatagtttatgtcttataagtttatttgactaaaaa 36626010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 44810056 - 44810123
Alignment:
Q  146 tcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttata 213  Q
    |||| |||||||| | |||||||||||| || | | ||||||||||||||  ||||||||||||||||    
T  44810056 tcacaagcttatagcttatttttactagcttttagcgttttttaataagctaattcaagtagcttata 44810123  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 35817077 - 35817115
Alignment:
Q  132 taatcgtcactttttcacgagcttataacctatttttac 170  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  35817077 taatcgttactttttcacgagcttataacttatttttac 35817115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 31062943 - 31063027
Alignment:
Q  148 acgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataactta 232  Q
    ||||||||||||| |||||| |  || |||| | | ||||| ||||||   |||||||||||||||| |||||| ||||||||||    
T  31062943 acgagcttataacttattttcaagagcttatagcggtttttgataagctatttcaagtagcttatagcttaaaatttataactta 31063027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 38684874 - 38684754
Alignment:
Q  116 aaaaagatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagt 215  Q
    ||||||||| ||||| ||| ||||| ||| ||| |||||| |||  |||||||||||| |||| | ||||||| ||||||  |||||||||||||||||     
T  38684874 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagctaattcaagtagcttatagc 38684775  T
Q  216 ttaaaacttataacttatcat 236  Q
    ||||| |||||||||||||||    
T  38684774 ttaaagcttataacttatcat 38684754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 214
Target Start/End: Original strand, 37083781 - 37083912
Alignment:
Q  84 ttatagtttatgtcttataagtttatttgattaaaaa-gatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtg 182  Q
    |||||| |||||||||||||| | ||||||||||||| ||   ||| | |||  |||||||| ||||||||||||| | |||||||||||| |||| |      
T  37083781 ttatagcttatgtcttataagctcatttgattaaaaaagacacgttaggtaactgtcactttctcacgagcttatagcttatttttactagcttatagca 37083880  T
Q  183 ttttttaataagcagattcaagtagcttatag 214  Q
     ||||||||||||  |||||||||||||||||    
T  37083881 atttttaataagctaattcaagtagcttatag 37083912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 9198277 - 9198185
Alignment:
Q  136 cgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataa 228  Q
    ||||||||| ||||||||||| | | |||||||||||| |||| | | ||||| ||||||  ||||||||||||| ||| |||||||||||||    
T  9198277 cgtcactttctcacgagcttaaagcttatttttactagcttatagcggtttttgataagctaattcaagtagcttttagcttaaaacttataa 9198185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 36879202 - 36879046
Alignment:
Q  70 tttgagcttatagtttatagtttatgtcttataagtttatttgattaa-aaagatctgtttgataatcgtcactttttcacgagcttataacctattttt 168  Q
    ||||| |||||||||||||| | |||||||||||||| |||||| ||  ||| | | ||||| |||  |||||||| ||| | | ||||||| |||||||    
T  36879202 tttgaacttatagtttatagct-atgtcttataagttcatttgactagtaaaaacccgtttggtaactgtcactttctcatgggattataacttattttt 36879104  T
Q  169 actagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttat 226  Q
    ||||| |||| |  |||||| ||||||  |||||||||||||| || ||| |||||||    
T  36879103 actagcttatagcatttttttataagctaattcaagtagcttagagcttataacttat 36879046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 1384850 - 1384762
Alignment:
Q  167 ttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc 255  Q
    |||||||||||| ||||| ||| |||||   ||||||||||||||| | ||||| ||||| | ||||||| | ||||||||||||||||    
T  1384850 ttactagtttatagtgttgtttgataaggtaattcaagtagcttatggattaaagcttatgatttatcattttttatgtcaattttacc 1384762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 32326236 - 32326158
Alignment:
Q  136 cgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag 214  Q
    ||||||||| |||| ||||| || | |||||||||||| |||| | | ||||| ||||||  |||||||||||||||||    
T  32326236 cgtcactttctcacaagcttgtagcttatttttactagcttatagaggtttttgataagctaattcaagtagcttatag 32326158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 7515308 - 7515268
Alignment:
Q  71 ttgagcttatagtttatagtttatgtcttataagtttattt 111  Q
    ||||||||||||||||||  |||||||||||||||| ||||    
T  7515308 ttgagcttatagtttataacttatgtcttataagttcattt 7515268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 97 - 220
Target Start/End: Complemental strand, 24523956 - 24523833
Alignment:
Q  97 cttataagtttatttgattaaaaagatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagca 196  Q
    |||||||||| |||||||||||||||   ||||| ||| ||||||||| | || |||||||||| |||||||||||| |||  | | ||||| ||| ||     
T  24523956 cttataagttcatttgattaaaaagactagtttgctaaccgtcactttctaacaagcttataacttatttttactagcttagagaggtttttgatatgct 24523857  T
Q  197 gattcaagtagcttatagtttaaa 220  Q
    |||||||||||||||||| |||||    
T  24523856 gattcaagtagcttatagcttaaa 24523833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 32467907 - 32467766
Alignment:
Q  84 ttatagtttatgtcttataagtttatttgattaaaaa-gatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtg 182  Q
    |||||| |||||||||||||| | |||||| |||||| || ||| ||| ||| ||||||||  ||  ||||||||| | |||||||||||| |||| ||     
T  32467907 ttatagcttatgtcttataagctcatttgactaaaaaagacctgattggtaaccgtcacttcctcgtgagcttatagcttatttttactagcttatagtc 32467808  T
Q  183 ttttttaataagcagattcaagtagcttatagtttaaaactta 225  Q
     ||||| ||||||| ||||||||||||||||| ||||| ||||    
T  32467807 gtttttgataagca-attcaagtagcttatagcttaaagctta 32467766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 41470053 - 41470151
Alignment:
Q  116 aaaaagatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag 214  Q
    ||||||| | ||||| |||  |||| ||| ||||||||||||||| || ||||||||| | || ||||||||| ||||||  | |||||||||||||||    
T  41470053 aaaaagacccgtttggtaactgtcattttctcacgagcttataacttaattttactagctcatagtgtttttttataagctaactcaagtagcttatag 41470151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 255
Target Start/End: Complemental strand, 6462552 - 6462365
Alignment:
Q  70 tttgagcttatagtttatagtttatgtcttataa-gtttatttgattaaaaa-gatctgtttgataatcgtcactttttcacgagcttataacctatttt 167  Q
    ||||||||||||| |  ||| ||||||||||||| | | |||||| |||||| || |  |||| ||| ||| ||||| || | |||||||| | ||||||    
T  6462552 tttgagcttatagctattagcttatgtcttataaagctcatttgactaaaaaagaaccatttggtaaccgttactttctcgcaagcttatagcttatttt 6462453  T
Q  168 tactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc 255  Q
    |||||| |||| ||| ||||| ||||||  ||||||||||||||||  ||||| |||||| ||||||||   |||| |||||||||||    
T  6462452 tactagcttatagtggtttttgataagctaattcaagtagcttatatcttaaagcttatagcttatcattatttatctcaattttacc 6462365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 16870033 - 16869957
Alignment:
Q  138 tcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag 214  Q
    ||||||| |||||| |||||| | |||||||||||| |||| | ||||||| ||||||  |||||||||||||||||    
T  16870033 tcactttctcacgaacttataccttatttttactagcttatagcgttttttgataagctaattcaagtagcttatag 16869957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 22028627 - 22028731
Alignment:
Q  69 atttgagcttatagtttatagtttatgtcttataagtttatttgattaaaaa-gatctgtttgataatcgtcactttttcacgagcttataacctatttt 167  Q
    ||||||| |||| | |||||| || ||||||||||| | |||||| |||||| || | ||||| ||| ||||||||| |||| |||||||| | ||||||    
T  22028627 atttgagtttatggcttatagcttttgtcttataagctcatttgactaaaaaagacccgtttggtaaccgtcactttctcacaagcttatagcttatttt 22028726  T
Q  168 tacta 172  Q
    |||||    
T  22028727 tacta 22028731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 4283066 - 4283184
Alignment:
Q  115 taaaaagatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag 214  Q
    ||||||||  |||||| ||| ||||| | | ||||||||||||| | |||||||||| | ||||    |||||| ||||||  |||||| ||||||||||    
T  4283066 taaaaagacatgtttggtaaccgtcattctctcacgagcttatagcttatttttactggcttataccattttttgataagctaattcaaatagcttatag 4283165  T
Q  215 tttaaaacttataacttat 233  Q
     ||||| |||||| |||||    
T  4283166 cttaaaccttatagcttat 4283184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 13838899 - 13838861
Alignment:
Q  198 attcaagtagcttatagtttaaaacttataacttatcat 236  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  13838899 attcaagtagcttatagcttaaaacttatagcttatcat 13838861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 274
Target Start/End: Original strand, 17259386 - 17259576
Alignment:
Q  84 ttatagtttatgtcttataagtttatttgattaaaaagatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgt 183  Q
    |||||| |||||||||||||| | | |||  |||||||| | ||||| ||| |||| ||||   ||||||||| |   ||| || ||||| |||| | ||    
T  17259386 ttatagcttatgtcttataagctcaattggctaaaaagacccgtttggtaaccgtcgctttcatacgagcttaaagattatattcactagcttatagcgt 17259485  T
Q  184 tttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacctttgttgctttaattgaaa 274  Q
    ||||| |||||   |||||||||| |||||| |||||  |||||||||||||| | | || |||| |||||  |||| || ||||||||||    
T  17259486 ttttttataagttaattcaagtagattatagcttaaagtttataacttatcatttttcatctcaaatttacacttgtagccttaattgaaa 17259576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 3540879 - 3540775
Alignment:
Q  74 agcttatagtttatagtttatgtcttataagtttatttgattaaaaagatct-gtttgataatcgtcactttttcacgagcttataacctatttttacta 172  Q
    ||||||||  |||||  |||||||||||| | | ||||||||||||| | || ||||| ||| || |||||| |||||| |||||||  |||||||||||    
T  3540879 agcttataacttataacttatgtcttata-gctcatttgattaaaaaaaacttgtttggtaaccgccactttatcacgaacttataatttatttttacta 3540781  T
Q  173 gtttat 178  Q
    ||||||    
T  3540780 gtttat 3540775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 10350439 - 10350571
Alignment:
Q  93 atgtcttataagtttatttgattaaaaa-gatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaat 191  Q
    |||||||||||||| |||||| |||||| ||  ||||||||||  |||||||| | ||  ||||||||| |||||||||||  ||||    |||||| ||    
T  10350439 atgtcttataagttcatttgactaaaaaagacttgtttgataagtgtcactttcttacaggcttataacttatttttactaacttataacatttttt-at 10350537  T
Q  192 aagcagattcaagtagcttatagtttaaaactta 225  Q
    ||    ||||||||||||||||| ||||||||||    
T  10350538 aaattaattcaagtagcttatagcttaaaactta 10350571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 214
Target Start/End: Original strand, 3535087 - 3535233
Alignment:
Q  70 tttgagcttatagtttatagtttat--gtcttataagtttatttgattaaaaagatctgtttgataatcgtcactttttcacgagcttataacctatttt 167  Q
    |||||| ||||||||||| ||||||  |||||||||||| |||||| | ||||||  |||||| |||  |||||||| |  |||| ||||| | ||||||    
T  3535087 tttgaggttatagtttattgtttatatgtcttataagttcatttgactgaaaagacatgtttggtaacagtcactttattgcgagtttatagcttatttt 3535186  T
Q  168 tactagtttatcgtgttttttaataagcagattcaagtagcttatag 214  Q
    |||||  |||| | ||||||| ||||||  |||||||||||||||||    
T  3535187 tactaacttatagcgttttttgataagctaattcaagtagcttatag 3535233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 21501605 - 21501682
Alignment:
Q  137 gtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag 214  Q
    |||||||| ||||||||||||| | ||||||||||||  ||| ||||||||| ||||||  |||||||||||||||||    
T  21501605 gtcactttctcacgagcttatagcttatttttactagcatatagtgttttttgataagctaattcaagtagcttatag 21501682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 39276332 - 39276417
Alignment:
Q  126 gtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagctta 211  Q
    |||||||||  |||| ||| ||||||||||||||| |||||||||||| ||||   ||||||| ||||||  ||||||||||||||    
T  39276332 gtttgataactgtcattttctcacgagcttataacttatttttactagcttataacgttttttgataagctaattcaagtagctta 39276417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 23051806 - 23051682
Alignment:
Q  84 ttatagtttatgtcttataagtttatttgattaaaaa-gatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtg 182  Q
    |||||||||||||||||||||   |||||| |||||| || ||||||| |||  |||||||| ||||||||||| | | ||||||||  ||||||| | |    
T  23051806 ttatagtttatgtcttataagcccatttgactaaaaaggacctgtttggtaacagtcactttctcacgagcttacagcttatttttatgagtttatagcg 23051707  T
Q  183 ttttttaataagcagattcaagtag 207  Q
     ||| | ||||||  ||||||||||    
T  23051706 gtttgtgataagctaattcaagtag 23051682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 23686387 - 23686422
Alignment:
Q  85 tatagtttatgtcttataagtttatttgattaaaaa 120  Q
    |||||||||| |||||||||||||||||||||||||    
T  23686387 tatagtttatatcttataagtttatttgattaaaaa 23686422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 41173733 - 41173780
Alignment:
Q  146 tcacgagcttataacctatttttactagtttatcgtgttttttaataa 193  Q
    |||| |||||||||||||| |||||| |||||| ||||||||||||||    
T  41173733 tcactagcttataacctatatttacttgtttatagtgttttttaataa 41173780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 5646080 - 5645998
Alignment:
Q  145 ttcacgagcttataacctattttt-actagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttat 226  Q
    ||||| |||||||||| ||||||| ||||| ||||    |||||| |||||| ||||||||||||||||| |||| |||||||    
T  5646080 ttcacaagcttataacttattttttactagcttatatcatttttttataagctgattcaagtagcttataatttataacttat 5645998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 22347477 - 22347424
Alignment:
Q  183 ttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcat 236  Q
    ||||||||||||   || |||||||||| ||| |||||||||||||||||||||    
T  22347477 ttttttaataagttaatccaagtagcttgtagcttaaaacttataacttatcat 22347424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 26552276 - 26552196
Alignment:
Q  138 tcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagttta 218  Q
    ||||||| |||||||| |||| | |||||||||| | |||| | ||||||||||||    ||||||||||| |||||||||    
T  26552276 tcactttctcacgagcatatagcttatttttactggcttatagagttttttaataacataattcaagtagcctatagttta 26552196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 47987129 - 47987101
Alignment:
Q  208 cttatagtttaaaacttataacttatcat 236  Q
    |||||||||||||||||||||||||||||    
T  47987129 cttatagtttaaaacttataacttatcat 47987101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 35926752 - 35926678
Alignment:
Q  140 actttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag 214  Q
    ||||| ||||||||||||| | |||||||||||| || | ||||||||| |||||| ||||||||||||||||||    
T  35926752 actttctcacgagcttatagcttatttttactagcttgtagtgttttttgataagctgattcaagtagcttatag 35926678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 9496747 - 9496814
Alignment:
Q  93 atgtcttataagtttatttgattaaaaagatctgtttgataatcgtcactttttcacgagcttataac 160  Q
    ||||| |||||| | |||||||||||||||| |||||| |||| |||| |||||||||||||||||||    
T  9496747 atgtcatataagctcatttgattaaaaagatatgtttggtaattgtcattttttcacgagcttataac 9496814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 5952001 - 5951951
Alignment:
Q  70 tttgagcttatagtttatagtttatgtcttataagtttatttgattaaaaa 120  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||||||    
T  5952001 tttgagcttataatttaaagtttatgttttataagtttatttgattaaaaa 5951951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 21516763 - 21516659
Alignment:
Q  116 aaaaagatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagt 215  Q
    |||||||  |||||| |||| |||| ||||||||||||||||||| || ||| |  || |||| | |||||||| |||||| | ||||||| |||||||     
T  21516763 aaaaagacatgtttggtaattgtcattttttcacgagcttataacttaatttgatgagcttatagcgttttttattaagcaaaatcaagtatcttatagc 21516664  T
Q  216 ttaaa 220  Q
    |||||    
T  21516663 ttaaa 21516659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 1415703 - 1415797
Alignment:
Q  116 aaaaagatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagctt 210  Q
    |||||| || ||||||||| |  || || |||||||||||||| | |||||||| || ||||| | ||||||| ||||||  |||||||||||||    
T  1415703 aaaaagctccgtttgataaccaccatttattcacgagcttatagcttatttttattaatttatagcgttttttgataagctaattcaagtagctt 1415797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 20792072 - 20791959
Alignment:
Q  117 aaaagatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtt 216  Q
    |||||| |||||||||||  || | |||| ||||| |||| | | ||||||||  |||| || ||| ||||| ||||||  ||||||||||||||||| |    
T  20792072 aaaagacctgtttgataactgtta-ttttacacgaccttacatcttatttttatgagttcatagtggtttttgataagctaattcaagtagcttatagct 20791974  T
Q  217 taaaacttataactt 231  Q
    |||| ||||||||||    
T  20791973 taaatcttataactt 20791959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 42747604 - 42747713
Alignment:
Q  146 tcacgagcttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgt 245  Q
    |||| |||||||| | || |||||  || |||| ||||||||| ||||||  ||||||||| ||||||  ||||| |||||| |||||||  | |||| |    
T  42747604 tcacaagcttatagcttaattttatgagcttatagtgtttttttataagctaattcaagtaacttataacttaaagcttatagcttatcactttttatct 42747703  T
Q  246 caattttacc 255  Q
    ||||||||||    
T  42747704 caattttacc 42747713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 10518264 - 10518316
Alignment:
Q  183 ttttttaataagcagattcaagtagcttatagtttaaaacttataacttatca 235  Q
    |||||| ||||||  ||| ||||||||||||| ||||| ||||||||||||||    
T  10518264 ttttttgataagctaatttaagtagcttatagcttaaagcttataacttatca 10518316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 15942541 - 15942493
Alignment:
Q  166 tttactagtttatcgtgttttttaataagcagattcaagtagcttatag 214  Q
    |||||||| |||| ||||||||| ||||||  |||||||||||||||||    
T  15942541 tttactaggttattgtgttttttgataagctaattcaagtagcttatag 15942493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 50056 - 49911
Alignment:
Q  70 tttgagcttatagtttatagtttatgtcttataagtttatttga-ttaaaaagatctgtttgataatcgtcactttttcacgagcttataacctattttt 168  Q
    |||||||||||||||| ||| ||||||||||| |  | |||||| | ||||||| | ||||| |||  |||||||| ||||||||||||| | |||||||    
T  50056 tttgagcttatagtttgtagcttatgtcttattaactcatttgactaaaaaagacccgtttggtaacggtcactttctcacgagcttatagcttattttt 49957  T
Q  169 actagtttatcgtgttttttaataagcagattcaagtagcttatag 214  Q
    |  || |||| | | ||| | ||||||  |||||||||||||||||    
T  49956 aagagcttatagcggtttgtgataagctaattcaagtagcttatag 49911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 7952 - 8006
Alignment:
Q  182 gttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcat 236  Q
    ||||||| |||||| |||||||||||| ||| ||||||| |||||||||||||||    
T  7952 gtttttttataagctgattcaagtagcatattgtttaaatcttataacttatcat 8006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 166560 - 166621
Alignment:
Q  117 aaaagatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttat 178  Q
    |||||| ||||||||||| || |||||  ||||||||||||||| |||||||||||| ||||    
T  166560 aaaagacctgtttgataaccgccacttcgtcacgagcttataacttatttttactagcttat 166621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 9750082 - 9749960
Alignment:
Q  91 ttatgtcttataagtttatttgatta-aaaagatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttatcgtgtttttta 189  Q
    ||||||||| |||||| ||||||||| |||| |||  |||| ||| | ||||||| ||| ||||||||| |||| |||||| ||||||| | |||||||     
T  9750082 ttatgtcttgtaagttcatttgattaaaaaaaatccttttgctaaccatcactttctcatgagcttatagccta-ttttaccagtttatagcgttttttg 9749984  T
Q  190 ataagcagattcaagtagcttata 213  Q
    |||||   |||||||||| |||||    
T  9749983 ataagttaattcaagtaggttata 9749960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 4325 - 4420
Alignment:
Q  86 atagtttatgtcttataagtttatttgattaaaaa---gatctgtttgataatcgtcactttttcacgagcttataacctatttttactagtttat 178  Q
    ||||||||| || |||||| | |||||| ||||||   ||| | ||||||||  |||||||| ||| ||| ||||||| |||||||||||||||||    
T  4325 atagtttatatcatataagctcatttgactaaaaaacagatttatttgataaatgtcactttatcatgagtttataacttatttttactagtttat 4420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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