View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2742_high_15 (Length: 365)

Name: NF2742_high_15
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2742_high_15
NF2742_high_15
[»] chr1 (3 HSPs)
chr1 (270-352)||(7220802-7220884)
chr1 (300-352)||(33713311-33713364)
chr1 (312-352)||(13211787-13211827)
[»] chr7 (7 HSPs)
chr7 (277-352)||(5102022-5102097)
chr7 (290-357)||(8038174-8038242)
chr7 (282-352)||(20175173-20175244)
chr7 (300-352)||(2504812-2504865)
chr7 (312-352)||(2564472-2564512)
chr7 (312-352)||(3327047-3327087)
chr7 (312-352)||(26134230-26134270)
[»] chr6 (1 HSPs)
chr6 (268-352)||(10504213-10504298)
[»] chr8 (3 HSPs)
chr8 (270-352)||(24119143-24119226)
chr8 (300-352)||(17972805-17972858)
chr8 (300-352)||(45265009-45265062)
[»] chr4 (1 HSPs)
chr4 (293-352)||(12590308-12590366)
[»] chr2 (2 HSPs)
chr2 (269-328)||(25939751-25939810)
chr2 (312-352)||(12950511-12950551)
[»] chr5 (3 HSPs)
chr5 (300-352)||(20533496-20533549)
chr5 (312-352)||(17337279-17337319)
chr5 (297-348)||(17830733-17830785)
[»] chr3 (1 HSPs)
chr3 (312-352)||(21302520-21302560)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 7220884 - 7220802
Alignment:
Q  270 cttcatgatttaaattagtctggtaatttcattcttctttcaccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    |||||||| |||||||||||   |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  7220884 cttcatgacttaaattagtccattaatttcattcttctttcaccttggtaaggtagacgagataagcttgcccgtttgtagaa 7220802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 33713364 - 33713311
Alignment:
Q  300 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    |||||||||||| |||||||||  ||||| |||||||||||||| |||||||||    
T  33713364 attcttctttcatccttggtaagatagacaagataaggttgcccatttgtagaa 33713311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 13211787 - 13211827
Alignment:
Q  312 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  13211787 ccttggtaaggtagatgagacaaggttgcccgtttgtagaa 13211827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 352
Target Start/End: Original strand, 5102022 - 5102097
Alignment:
Q  277 atttaaattagtctggtaatttcattcttctttcaccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    |||||||||||  | |||| |||||||||||||||||| ||||| ||||| |||||| |||||| |||||||||||    
T  5102022 atttaaattagcttagtaacttcattcttctttcacctcggtaaggtagatgagatagggttgctcgtttgtagaa 5102097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 8038242 - 8038174
Alignment:
Q  290 tggtaatttcattcttctttcacctt-ggtaatgtagacgagataaggttgcccgtttgtagaattatc 357  Q
    |||||| || |||||||||||| ||| |||||||||||||||| | |||||||||||||||||| ||||    
T  8038242 tggtaactttattcttctttcatctttggtaatgtagacgagacagggttgcccgtttgtagaactatc 8038174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 20175244 - 20175173
Alignment:
Q  282 aattagtctggtaatttcattcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    |||||| || |||| ||||||||||||||| ||||||||| |||||||||||  ||||| ||||||||||||    
T  20175244 aattagcctagtaacttcattcttctttcatccttggtaaggtagacgagatggggttgtccgtttgtagaa 20175173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 2504865 - 2504812
Alignment:
Q  300 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    |||||||||||| ||||||||| |||||||||||| |||| ||| |||||||||    
T  2504865 attcttctttcatccttggtaaggtagacgagatatggtttcccatttgtagaa 2504812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 2564512 - 2564472
Alignment:
Q  312 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  2564512 ccttggtaaggtagacgagatagggttgcctgtttgtagaa 2564472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 3327047 - 3327087
Alignment:
Q  312 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  3327047 ccttggtaaggtagacgagatatggttgcctgtttgtagaa 3327087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 26134230 - 26134270
Alignment:
Q  312 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    ||||||||| |||||||||||| ||||| ||||||||||||    
T  26134230 ccttggtaaggtagacgagatatggttgtccgtttgtagaa 26134270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 10504298 - 10504213
Alignment:
Q  268 tacttcatgatttaaattagtctggtaatttcattcttctttcacc-ttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    |||||||||| |||||| ||||  |||| ||| ||||||||||| | ||||||| |||||||||||| |||||||| |||||||||    
T  10504298 tacttcatgacttaaatcagtcgagtaacttcgttcttctttcatcattggtaaggtagacgagatagggttgcccctttgtagaa 10504213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 24119143 - 24119226
Alignment:
Q  270 cttcatgatttaaattagtctggtaatttcattcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    ||||||||||||||| || || |||| |||  | |||||||| || |||||| |||||||||||| ||||||||||||||||||    
T  24119143 cttcatgatttaaatcagcctagtaacttcgattttctttcatccctggtaaggtagacgagatagggttgcccgtttgtagaa 24119226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 17972858 - 17972805
Alignment:
Q  300 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    ||||||||| || ||||||| | ||||||||||||||||||||||||| |||||    
T  17972858 attcttcttacatccttggtgaggtagacgagataaggttgcccgtttttagaa 17972805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 45265009 - 45265062
Alignment:
Q  300 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    |||||||||||| ||||||||| |||||||||||| | ||| ||||||||||||    
T  45265009 attcttctttcatccttggtaaagtagacgagatatgattggccgtttgtagaa 45265062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 12590308 - 12590366
Alignment:
Q  293 taatttcattcttctttcaccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    |||||| |||||| |||| ||||  ||| |||||||||||||||||||||||||||||||    
T  12590308 taattttattctt-tttcccctttataaggtagacgagataaggttgcccgtttgtagaa 12590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 25939810 - 25939751
Alignment:
Q  269 acttcatgatttaaattagtctggtaatttcattcttctttcaccttggtaatgtagacg 328  Q
    ||||||||| |||||| ||||  |||||| |||||| ||||||||||||||| |||||||    
T  25939810 acttcatgacttaaataagtccagtaattccattctcctttcaccttggtaaggtagacg 25939751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 12950511 - 12950551
Alignment:
Q  312 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    ||||||||| |||||||||||| || |||||||||||||||    
T  12950511 ccttggtaaggtagacgagatagggctgcccgtttgtagaa 12950551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 20533496 - 20533549
Alignment:
Q  300 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    ||||||||| || ||||||||||||||| |||||| |||||||| |||||||||    
T  20533496 attcttcttacatccttggtaatgtagatgagatatggttgcccatttgtagaa 20533549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 17337279 - 17337319
Alignment:
Q  312 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    |||| |||| |||||||||||||||||| ||||||||||||    
T  17337279 ccttcgtaaggtagacgagataaggttgtccgtttgtagaa 17337319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 17830785 - 17830733
Alignment:
Q  297 ttcattcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgt 348  Q
    ||||||||||||||| || |||| | |||||||||||| ||||||||||||||    
T  17830785 ttcattcttctttcatccgtggtgaggtagacgagatatggttgcccgtttgt 17830733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 21302560 - 21302520
Alignment:
Q  312 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 352  Q
    ||||||||| |||||||||||| |||||| |||||||||||    
T  21302560 ccttggtaaggtagacgagatagggttgctcgtttgtagaa 21302520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University