View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2742_high_18 (Length: 321)
Name: NF2742_high_18
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 42511231 - 42511555
Alignment:
| Q |
1 |
agactacgggccaccttgatgataagcaacacccatactatctgttgcaagcaataaacgaagttcagcgggagccgaaaggattgagcataatcaatag |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
42511231 |
agactacgggccaccacgatgataagcaacacctatactgtatgttgcaagcaataaacgaagctcagcgggagccgaaaggattgagcataatcaacag |
42511330 |
T |
|
| Q |
101 |
atcgctcgtagaccttgttttaagtttggctaaaaagtcaaaatacatattacctctcatacattatgatataatagcta-----tctcatttccattcc |
195 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
42511331 |
atcactcgtagaccttgttccaagtttggctaaaaagtcaaaatacatattacctctcatacattatgatataatagctattacctctcatttgcattcg |
42511430 |
T |
|
| Q |
196 |
gtatctcatacattcaactactataaaatgtttaataagttatgaaacatttcatatggggagataaagaagaggcccagtagctgcaaggttgtgacag |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42511431 |
gtatctcatacattcaactactataaaatgtttaatcagttatgaaacatttcatatggggagataaagaagaggcccagcagctgcaaggttgtgacag |
42511530 |
T |
|
| Q |
296 |
tgggtgaaaagaaggtttccatcaa |
320 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42511531 |
tgggtgaaaagaaggtttccatcaa |
42511555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 31416078 - 31416123
Alignment:
| Q |
18 |
gatgataagcaacacccatactatctgttgcaagcaataaacgaag |
63 |
Q |
| |
|
|||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
31416078 |
gatgataagcaacacccatactgtctgccgtaagcaataaacgaag |
31416123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 14623909 - 14623954
Alignment:
| Q |
18 |
gatgataagcaacacccatactatctgttgcaagcaataaacgaag |
63 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||||||||| |||| |
|
|
| T |
14623909 |
gatgataagcaacacccatactatctgcttcgagcaataaaggaag |
14623954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 3776703 - 3776748
Alignment:
| Q |
18 |
gatgataagcaacacccatactatctgttgcaagcaataaacgaag |
63 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||||||| ||||| |
|
|
| T |
3776703 |
gatgataagcaacacccatactgtctgctgtaagcaataagcgaag |
3776748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University