View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_high_22 (Length: 282)
Name: NF2742_high_22
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_high_22 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 25179175 - 25179439
Alignment:
| Q |
18 |
atgatcaatggagagaaataggaaatattatgtgcaaacctcaaggaagatggagttgcaggccacttagcttggttcctaagagaaggaggcatagaat |
117 |
Q |
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| T |
25179175 |
atgatcaatggagagaaataagaaatattatgtgcaaacctcaaggaagatggagttgcaggccacttagcttggttcctaagagaaggaggcatagaat |
25179274 |
T |
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| Q |
118 |
gaagaaaaaagtagtcactccaatccaaaatagcaccttttttcactcccaacctactaccataaccctcataagtactaggagagttagcaaattcttc |
217 |
Q |
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| T |
25179275 |
gaagaaaaaagtagtcactccaatccaaaatagcaccttttttcactcccaacctactaccataaccctcataagtactaggagagttagcaaattcttc |
25179374 |
T |
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| Q |
218 |
cttcacttcaagtggaaggttaaagaactcacgccaaacttccttagcactttccatcatctcat |
282 |
Q |
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| T |
25179375 |
cttcacttcaagtggaaggttaaagaactcacgccaaacttccttagcactttccatcaactcat |
25179439 |
T |
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Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 77 - 276
Target Start/End: Complemental strand, 4777020 - 4776821
Alignment:
| Q |
77 |
aggccacttagcttggttcctaagagaaggaggcatagaatgaagaaaaaagtagtcactccaatccaaaatagcaccttttttcactcccaacctacta |
176 |
Q |
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| T |
4777020 |
aggccacttggtttggtccctaagtgagcaaggcatgtaatgaagaaaaaagtagtcactccaatccaaaatggcaccttttttcactcccaaacgactt |
4776921 |
T |
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| Q |
177 |
ccataaccctcataagtactaggagagttagcaaattcttccttcacttcaagtggaaggttaaagaactcacgccaaacttccttagcactttccatca |
276 |
Q |
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| T |
4776920 |
ccatatccctcataagtggtaggagaattagcatactcctctttcacctcaagtggtagttcaaaaaactcacgccaaacttccctagcacgtttcatca |
4776821 |
T |
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