View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_high_25 (Length: 271)
Name: NF2742_high_25
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 10358372 - 10358486
Alignment:
| Q |
1 |
acaacattcaaaaaatatccctaaaacacaccaatgcgattacaacaaacaataaccaaatcaaatagcgcaaaatcaatccataaaacctaatcaaagt |
100 |
Q |
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| T |
10358372 |
acaagattcaaaaaatatccctaaaacacaccaatgcgattacaacaaacaataaccaaatcaaatagcgcaaaatcaatccataaaacctaatcaaagt |
10358471 |
T |
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| Q |
101 |
ttttcattcagtatc |
115 |
Q |
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|||| |||||||||| |
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| T |
10358472 |
tttttattcagtatc |
10358486 |
T |
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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 10358573 - 10358619
Alignment:
| Q |
202 |
cctgaagattctgcagcttgatatactcccaaactttcttaacagct |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10358573 |
cctgaagattctgcagcttgatatactcccaaactttcttaacagct |
10358619 |
T |
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