View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_high_5 (Length: 635)
Name: NF2742_high_5
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 20 - 627
Target Start/End: Original strand, 2628425 - 2629035
Alignment:
| Q |
20 |
tctggctcccccgatgtccttcctcatttcaagttgtctcaaaacttaaaaaccatttctcaaaatcccaaactcccaaaactcgtttccaatattccct |
119 |
Q |
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| T |
2628425 |
tctggctcccccgatgtccttcctcatttcaagttgtctcaaaacttcaaaaccatttctcaaaatcccaaactcccaaaactcgtttccaatatttcct |
2628524 |
T |
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| Q |
120 |
tttccaccaaaaaccacttccaaaacatcatatttcacaagtttcgaaatcataaaagtcccaattttccttctctgcaggaggacatggcgccatcgtt |
219 |
Q |
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| T |
2628525 |
tttccaccaaaaaccacttccaaaacatcatatttcacaagtttcgaaatcataaaagtcccaattttccttctctgcaggaggacatggcgccatcgtt |
2628624 |
T |
|
| Q |
220 |
tctgggaaagctatttgatgcagcttctccttaataagtttcttcgtattgtaatcagcattgttaaaccgagtctgaaaattnnnnnnnnn---tgaaa |
316 |
Q |
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| T |
2628625 |
tctgggaaagctatttgatgcagctgctccttaataagtatcttcgtattgtaatcagcattgttaaaccgaatctgaaaataaaaataaaaaaatgaaa |
2628724 |
T |
|
| Q |
317 |
tgagaatttgtttcgtctagaagggccaattcggacgtgtgaaataccagaacagaattactattgaatcagacctgaatcgcttccaactctggcaaaa |
416 |
Q |
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| T |
2628725 |
tgagaatttgtttcgtccagaagggccgattcggacgtgtgaaataccagcacagaattactattgaatcaaacctgaatcgcttccaactctggcaaaa |
2628824 |
T |
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| Q |
417 |
tagatatatctggacaatcttcctttggcacaccgtcatcatcaaccaactcttcagattttggacccttcatagacttgttataccttgaacgtgcatt |
516 |
Q |
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| T |
2628825 |
tagatatatctgaacaatcttcctttggcacaccgtcatcatcaaccaactcttcagattttggacccttcatagacttgttataccttgaacgtgcatt |
2628924 |
T |
|
| Q |
517 |
ataaatctgcttgatagtaatcccatcgtcagctcttcttttcttcaaagtcataagaatattttttggacggacagtgttatttgtcatctcatgaacg |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628925 |
ataaatctgcttgatagtaatcccatcgtcagctcttcttttcttcaaagtcataagaatattttttggacggacagtgttatttgtcatctcatgaacg |
2629024 |
T |
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| Q |
617 |
agtttcatctc |
627 |
Q |
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||||||||||| |
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| T |
2629025 |
agtttcatctc |
2629035 |
T |
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