View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2742_high_8 (Length: 497)

Name: NF2742_high_8
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2742_high_8
NF2742_high_8
[»] chr2 (8 HSPs)
chr2 (14-480)||(32071316-32071775)
chr2 (289-479)||(32031113-32031306)
chr2 (290-472)||(32078105-32078289)
chr2 (289-468)||(32064248-32064430)
chr2 (36-134)||(17560782-17560878)
chr2 (14-182)||(41501028-41501193)
chr2 (92-158)||(13779129-13779195)
chr2 (92-129)||(16907916-16907953)
[»] chr7 (2 HSPs)
chr7 (36-134)||(9885675-9885770)
chr7 (92-190)||(12163717-12163815)
[»] chr6 (2 HSPs)
chr6 (84-134)||(11714191-11714241)
chr6 (100-180)||(30654564-30654644)
[»] chr5 (1 HSPs)
chr5 (79-137)||(34443301-34443359)
[»] chr4 (2 HSPs)
chr4 (36-148)||(53402495-53402604)
chr4 (88-148)||(35043155-35043214)
[»] chr3 (2 HSPs)
chr3 (119-182)||(35314179-35314242)
chr3 (36-127)||(5528353-5528441)
[»] chr1 (1 HSPs)
chr1 (36-176)||(1485354-1485491)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 480
Target Start/End: Original strand, 32071316 - 32071775
Alignment:
Q  14 cagttagcacctccttcttgtatatataagggtgatctctgcgtcgcccttaagatatgattcattttttccatacatttttacacattcaacctcattt 113  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||||||| ||| |||||||||||||| | ||||||||||||||||||||||||||||    
T  32071316 cagttagcacctccttcctatatatataagggtaatctctgcgtcgccctcaaggtatgattcatttttcctatacatttttacacattcaacctcattt 32071415  T
Q  114 tatacactgacttgagcgttgaattactaacgtgtctacaaacaccctccaatccaccacgaagacttcgttgccacttcactagagcaccacaccttta 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||    
T  32071416 tatacactaacttgagcgttgaattactaacgtgtctacaaacaccctccaatccaccacgaagatttcgttgccactgcactggagcaccataccttta 32071515  T
Q  214 cagttgcctccatccctctctaccgggcagatcaataaggattaataattttagtgctgctacgnnnnnnnatttcggtgggtttgggaagcaaattgag 313  Q
    |||||||||||||||||||||||||| ||||||          ||| ||||||||||| |||||       ||||||||||||||||||||||||| |||    
T  32071516 cagttgcctccatccctctctaccggacagatc----------aatgattttagtgctactacgtttttttatttcggtgggtttgggaagcaaatagag 32071605  T
Q  314 gcaacccagttgatgaaaatgcaactttttcattagttgttgatggaaatcttgtgtgggctaatgttgatggaagaattgtttggcaaacaaacacttc 413  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32071606 gcaacccagttgatgaaaatgcaactttttcattaggtgttgatggaaatcttgtgtgggctaatgatgatggaagaattgtttggcaaacaaacacttc 32071705  T
Q  414 caataa---tgttgttgccttaaggttagtgtcaaatggtaacatggttttaattgatactaaaggtaat 480  Q
    ||||||   ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  32071706 caataaaggtgttgttgccttaaggttactctcaaatggtaacatggttttaattgatactaaagttaat 32071775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 289 - 479
Target Start/End: Original strand, 32031113 - 32031306
Alignment:
Q  289 cggtgggtttgggaagcaaattgaggcaacccagttgatgaaaatgcaactttttcattagttgttgatggaaatcttgtgtgggctaatgttgatggaa 388  Q
    |||||||| |||||||||||| ||||||| ||||||| ||||||||  ||||||||||||| || ||||||||||||||||| |||||||| ||||||||    
T  32031113 cggtgggtatgggaagcaaatagaggcaatccagttggtgaaaatggtactttttcattaggtgctgatggaaatcttgtgttggctaatgctgatggaa 32031212  T
Q  389 gaattgtttggcaaacaaacacttccaataa---tgttgttgccttaaggttagtgtcaaatggtaacatggttttaattgatactaaaggtaa 479  Q
    |||||||||||||||||||||||||||||||   |||||||||||| |||||| | ||||||||||||||||||||||||||| | ||||||||    
T  32031213 gaattgtttggcaaacaaacacttccaataaaggtgttgttgcctttaggttactctcaaatggtaacatggttttaattgatgccaaaggtaa 32031306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 290 - 472
Target Start/End: Original strand, 32078105 - 32078289
Alignment:
Q  290 ggtgggtttgggaagcaaattgaggcaacccagttgatgaaaatgcaactttttcattagttgttgatggaaatcttgtgtgggctaatgttgatggaag 389  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||  ||||||| ||||||||||| |||||||| |||||||||    
T  32078105 ggtgggtgtgggaagcaaatagaggcagcccagttgatgaaaatgcaactttttcattagaagttgatgaaaatcttgtgttggctaatgctgatggaag 32078204  T
Q  390 aattgtttggcaaacaaacacttccaataa--tgttgttgccttaaggttagtgtcaaatggtaacatggttttaattgatacta 472  Q
    |||| |||||||||||||||||||||||||  |||| ||||||| |||||| | |||||| ||||||||||||||||||||||||    
T  32078205 aattatttggcaaacaaacacttccaataaggtgttattgcctttaggttactctcaaatagtaacatggttttaattgatacta 32078289  T

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Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 289 - 468
Target Start/End: Original strand, 32064248 - 32064430
Alignment:
Q  289 cggtgggtttgggaagcaaattgaggcaacccagttgatgaaaatgcaactttttcattagttgttgatggaaatcttgtgtgggctaatgttgatggaa 388  Q
    |||||||| |||||||||||| ||||||||||||||| ||||||||  ||||||||||||| || ||||||||||||||||| |||||||| ||||||||    
T  32064248 cggtgggtatgggaagcaaatagaggcaacccagttggtgaaaatggtactttttcattaggtgctgatggaaatcttgtgttggctaatgctgatggaa 32064347  T
Q  389 gaattgtttggcaaacaaacacttccaataa---tgttgttgccttaaggttagtgtcaaatggtaacatggttttaattgat 468  Q
    |||||||||||||||||||||||||||||||   ||||||||| || |||||| | |||||||||||||||||||||||||||    
T  32064348 gaattgtttggcaaacaaacacttccaataaaggtgttgttgcatttaggttactctcaaatggtaacatggttttaattgat 32064430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 17560878 - 17560782
Alignment:
Q  36 tatataagggtgatctctgcgtcgcccttaagatatgattcattttttccatacatttttacacattcaacctcattttatacactgacttgagcgttg 134  Q
    |||||||||||||| |||||||| |||| ||| ||  |||||||||| ||| ||||| ||||||||||||||||||||  |||||||||||||||||||    
T  17560878 tatataagggtgat-tctgcgtcaccctcaaggtacaattcattttt-ccacacattcttacacattcaacctcatttcctacactgacttgagcgttg 17560782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 41501028 - 41501193
Alignment:
Q  14 cagttagcacctccttcttgtatatataagggtgatctctgcgtcgcccttaagatatgattcattttttccatacatttttacacattcaacctcattt 113  Q
    ||||||||  ||||| ||| |||||||||| ||| |||| ||||| |||| ||| || |||||||||   ||| || |||||||||||| ||||||||||    
T  41501028 cagttagcgtctcctccttctatatataagagtg-tctccgcgtcaccctcaaggtacgattcatttc--ccacacttttttacacattaaacctcattt 41501124  T
Q  114 tatacactgacttgagcgttgaattactaacgtgtctacaaacaccctccaatccaccacgaagacttc 182  Q
      |||||||||||||| |||  ||| |||| ||| || ||  ||||||||  |||||||| ||||||||    
T  41501125 cctacactgacttgagtgttagattgctaatgtgcctgcaggcaccctccgttccaccacaaagacttc 41501193  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 13779129 - 13779195
Alignment:
Q  92 ttttacacattcaacctcattttatacactgacttgagcgttgaattactaacgtgtctacaaacac 158  Q
    ||||||||||||||||||||||  |||||| |||||||||||  | | |||||||| ||| ||||||    
T  13779129 ttttacacattcaacctcatttcttacactaacttgagcgttagactgctaacgtgcctataaacac 13779195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 16907953 - 16907916
Alignment:
Q  92 ttttacacattcaacctcattttatacactgacttgag 129  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  16907953 ttttacacattcaacctcattttctacaatgacttgag 16907916  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 9885675 - 9885770
Alignment:
Q  36 tatataagggtgatctctgcgtcgcccttaagatatgattcattttttccatacatttttacacattcaacctcattttatacactgacttgagcgttg 134  Q
    |||||||||||| |||| | ||| ||||  |||||||||||||||   ||| ||||||||||| ||||||| |||||| |||||| |||||||||||||    
T  9885675 tatataagggtg-tctcagtgtcaccctcgagatatgattcatttc--ccacacatttttacaaattcaacgtcatttcatacaccgacttgagcgttg 9885770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 12163717 - 12163815
Alignment:
Q  92 ttttacacattcaacctcattttatacactgacttgagcgttgaattactaacgtgtctacaaacaccctccaatccaccacgaagacttcgttgccac 190  Q
    |||||||||||||||| |||||  |||||| || ||||||||| | | |||||||| || ||  ||||||||  ||||||  ||||||||||| |||||    
T  12163717 ttttacacattcaaccccatttcctacactaacatgagcgttggagtgctaacgtgccttcaggcaccctccgttccaccgtgaagacttcgtcgccac 12163815  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 11714241 - 11714191
Alignment:
Q  84 ccatacatttttacacattcaacctcattttatacactgacttgagcgttg 134  Q
    ||||||||||||||||||||||||||||||  ||||| |||||||| ||||    
T  11714241 ccatacatttttacacattcaacctcatttcctacacagacttgagtgttg 11714191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 30654644 - 30654564
Alignment:
Q  100 attcaacctcattttatacactgacttgagcgttgaattactaacgtgtctacaaacaccctccaatccaccacgaagact 180  Q
    ||||||||||||||| |||||| |||||||| ||| | || |||||||||| ||  |||||| | |||||||  |||||||    
T  30654644 attcaacctcattttctacactcacttgagcattggagtattaacgtgtctgcaggcacccttctatccaccgtgaagact 30654564  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 34443359 - 34443301
Alignment:
Q  79 tttttccatacatttttacacattcaacctcattttatacactgacttgagcgttgaat 137  Q
    |||| ||| ||| ||||||||||||||| ||||||  ||||||||||||||||||||||    
T  34443359 ttttcccacacacttttacacattcaacttcatttcctacactgacttgagcgttgaat 34443301  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 53402604 - 53402495
Alignment:
Q  36 tatataagggtgatctctgcgtcgcccttaagatatgattcattttttccatacatttttacacattcaacctcattttatacactgacttgagcgttga 135  Q
    |||||||||||||| || ||||| |||| ||| || |||||||||   ||| ||| ||||||||||||| ||||||||  | ||| ||||||||||||||    
T  53402604 tatataagggtgatttc-gcgtcaccctcaaggtacgattcatttc--ccacacacttttacacattcatcctcatttcctgcaccgacttgagcgttga 53402508  T
Q  136 attactaacgtgt 148  Q
    | | |||||||||    
T  53402507 aatgctaacgtgt 53402495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 35043155 - 35043214
Alignment:
Q  88 acatttttacacattcaacctcattttatacactgacttgagcgttgaattactaacgtgt 148  Q
    |||| ||||||||||||||||||||| | |||  ||||||||||||||| | |||||||||    
T  35043155 acatatttacacattcaacctcatttcacaca-agacttgagcgttgaagtgctaacgtgt 35043214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 35314179 - 35314242
Alignment:
Q  119 actgacttgagcgttgaattactaacgtgtctacaaacaccctccaatccaccacgaagacttc 182  Q
    |||||||||||||||| | | ||||||||||| ||||||||||||  |||||| |||| |||||    
T  35314179 actgacttgagcgttggagtgctaacgtgtctgcaaacaccctccgttccaccgcgaacacttc 35314242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 5528353 - 5528441
Alignment:
Q  36 tatataagggtgatctctgcgtcgcccttaagatatgattcattttttccatacatttttacacattcaacctcattttatacactgacttg 127  Q
    |||||||||||||| |||||||| |||| ||| || |||| |||| |  || ||| ||||||||||||||||||||||  ||| ||||||||    
T  5528353 tatataagggtgat-tctgcgtcaccctcaaggtacgatttatttct--cacacacttttacacattcaacctcatttcctactctgacttg 5528441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 176
Target Start/End: Complemental strand, 1485491 - 1485354
Alignment:
Q  36 tatataagggtgatctctgcgtcgcccttaagatatgattcattttttccatacatttttacacattcaacctcattttatacactgacttgagcgttga 135  Q
    ||||||||| |||| || ||||| |||| ||| ||||||||||||   ||  |||||||||||||||| | |||| ||  |||||||| |||||||||      
T  1485491 tatataaggatgat-tccgcgtcaccctcaaggtatgattcatttc--cctcacatttttacacattccatctcaattcctacactgatttgagcgtttg 1485395  T
Q  136 attactaacgtgtctacaaacaccctccaatccaccacgaa 176  Q
    | | ||||||||||| || |||||||||  ||| |||||||    
T  1485394 agtgctaacgtgtctgcatacaccctccgttccgccacgaa 1485354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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