View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2742_low_1 (Length: 813)

Name: NF2742_low_1
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2742_low_1
NF2742_low_1
[»] chr4 (14 HSPs)
chr4 (268-795)||(4027745-4028272)
chr4 (19-212)||(4028328-4028521)
chr4 (541-794)||(3950879-3951129)
chr4 (643-795)||(4013525-4013674)
chr4 (638-797)||(4005277-4005436)
chr4 (672-795)||(3991218-3991341)
chr4 (485-619)||(4215913-4216055)
chr4 (485-597)||(3796811-3796931)
chr4 (533-593)||(3961099-3961159)
chr4 (358-445)||(3950699-3950786)
chr4 (340-438)||(4013923-4014021)
chr4 (548-593)||(4221238-4221283)
chr4 (548-595)||(3822703-3822750)
chr4 (312-382)||(4014503-4014577)
[»] chr5 (2 HSPs)
chr5 (662-794)||(13400464-13400594)
chr5 (67-116)||(26619007-26619056)


Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 268 - 795
Target Start/End: Complemental strand, 4028272 - 4027745
Alignment:
Q  268 tttaaattctttcaaccaacattaatnnnnnnnttaacactatgttaatatatttaaatttgaagataactgcatgtcattgtcagatgcttcatacaga 367  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4028272 tttaaattctttcaaccaacattaataaaaaaattaacactatgttaatatatttaaatttgaagataactgcatgtcattgtcagatgcttcatacaga 4028173  T
Q  368 taattccagcatgtaaattgttaagcaactcaacgtttgcccctgctattttatatttaaataatggtgacattaatannnnnnnaataatatacagatc 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  4028172 taattccagcatgtaaattgttaagcaactcaacgtttgcccctgctattttatatttaaataatggtgacattaatatttttttaataatatacagatc 4028073  T
Q  468 taatgctctgtgggagtgtgaatgtgtattagttcacactttaaactgcaaggtcaatgacattcatatgagtgaaagtcgaatcagatctctagcagcc 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4028072 taatgctctgtgggagtgtgaatgtgtattagttcacactttaaactgcaaggtcaatgacattcatatgagtgaaagtcgaatcagatctctagcagcc 4027973  T
Q  568 aaagcattcaaggtcagtaattgctttcttcaggctatggccattaattttgctttctgtgatcttttcatttcatttcttttctctttcgttccggtaa 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4027972 aaagcattcaaggtcagtaattgctttcttcaggctatggccattaattttgctttctgtgatcttttcatttcatttcttttctctttcgttccggtaa 4027873  T
Q  668 tattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttcca 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4027872 tattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttcca 4027773  T
Q  768 gagcttctcaaataatttatgctgtaat 795  Q
    ||||||||||||||||||||||||||||    
T  4027772 gagcttctcaaataatttatgctgtaat 4027745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 4028521 - 4028328
Alignment:
Q  19 atgcaccaaactgttgttaaccaaatcaagtgagagactttccgacccttctttcctttgcaaagaaaattgaacaatagaaaggtatctactatctcgt 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4028521 atgcaccaaactgttgttaaccaaattaagtgagagactttccgacccttctttcctttgcaaagaaaattgaacaatagaaaggtatctactatctcgt 4028422  T
Q  119 agctccaaccatttgaaaattagatcccaacaattcctcttaatgaagagagttaaattatgagacatttggaagaaaaaggtcaaggttagtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4028421 agctccaaccatttgaaaattagatcccaacaattcctcttaatgaagagagttaaattatgagacatttggaagaaaaaggtcaaggttagtt 4028328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 541 - 794
Target Start/End: Original strand, 3950879 - 3951129
Alignment:
Q  541 gaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctttcttcaggctatggccattaattttgctttctgtgatcttttcattt 640  Q
    |||||| ||||||||||||||||||||||| |||| |||||||| ||||||||||||   |||||| || |||||||   ||| |||||| ||||| |||    
T  3950879 gaaagttgaatcagatctctagcagccaaaacattgaaggtcagaaattgctttcttattgctatgaccgttaatttaattttttgtgatattttctttt 3950978  T
Q  641 catttcttttctctttcgttccggtaatattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgtt 740  Q
    ||||| |||||| |||||||||| |||||  ||||||||||||||||||| |  ||| |||| ||||||||  |||||||| ||||  |||||| |||||    
T  3950979 cattt-ttttctgtttcgttccgttaataaccttgtgtttcccttattgtgacgttcaaggttctagagac--agaaagattgttcgtagtgcacttgtt 3951075  T
Q  741 ccaattcaatggcgtatttgttttccagagcttctcaaataatttatgctgtaa 794  Q
    ||||| ||||||| ||||||  |||  |||| ||||||| ||| ||||||||||    
T  3951076 ccaatccaatggcatatttgccttctggagcctctcaaacaatatatgctgtaa 3951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 643 - 795
Target Start/End: Complemental strand, 4013674 - 4013525
Alignment:
Q  643 tttcttttctctttcgttccggtaatattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttcc 742  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||| || ||| |||| |||||||||||||||||| |||| | ||| | |||||||    
T  4013674 tttcttttctctttc--tccggta-taatcttgtgtttcccttattgtgatgttcaaggttctagagacgaagaaagattgttccgtgtgaaattgttcc 4013578  T
Q  743 aattcaatggcgtatttgttttccagagcttctcaaataatttatgctgtaat 795  Q
    ||||||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  4013577 aattcaatggcgtatttgtcttccggagcttctcaaataatatatgctgtaat 4013525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 638 - 797
Target Start/End: Complemental strand, 4005436 - 4005277
Alignment:
Q  638 tttcatttcttttctctttcgttccggtaatattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcattt 737  Q
    ||||||||||||||  |||| ||| | |||||  ||||||||||||||||||   | ||| |||| |||||||||||||||||| |||||||||||| ||    
T  4005436 tttcatttcttttcgatttctttctgataataaccttgtgtttcccttattgcgttattcaaggttctagagacgaagaaagattgttcagagtgcactt 4005337  T
Q  738 gttccaattcaatggcgtatttgttttccagagcttctcaaataatttatgctgtaattg 797  Q
    |||||| ||||||||| ||||| | |||  || |||||||| |||| |||||||||||||    
T  4005336 gttccagttcaatggcatatttatcttctggaacttctcaactaatatatgctgtaattg 4005277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 672 - 795
Target Start/End: Complemental strand, 3991341 - 3991218
Alignment:
Q  672 cttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttccagagc 771  Q
    ||||||||||||||||||  || ||| |||| ||| |||||||||||||| |||||||||| | ||||||||||||||||||| |||||| |||| ||||    
T  3991341 cttgtgtttcccttattgatatattcaaggttctacagacgaagaaagattgttcagagtgaagttgttccaattcaatggcgcatttgtcttccggagc 3991242  T
Q  772 ttctcaaataatttatgctgtaat 795  Q
    |||   |||||| |||||||||||    
T  3991241 ttcatcaataatatatgctgtaat 3991218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 619
Target Start/End: Complemental strand, 4216055 - 4215913
Alignment:
Q  485 gtgaatgtgtattagttcacactttaaactgcaaggtcaatgacatt--------catatgagtgaaagtcgaatcagatctctagcagccaaagcattc 576  Q
    |||||||||||  |||||||||||| || ||||||||||||||||||        |||||||  |||||| |||||||||||||||| |||||||||||     
T  4216055 gtgaatgtgtacgagttcacacttttaaatgcaaggtcaatgacattgcttcttccatatgatagaaagttgaatcagatctctagcggccaaagcattg 4215956  T
Q  577 aaggtcagtaattgctttcttcaggctatggccattaattttg 619  Q
    ||| || || || ||||||||  ||||||  |||||| |||||    
T  4215955 aagttccgttatagctttcttatggctatcaccattacttttg 4215913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 597
Target Start/End: Complemental strand, 3796931 - 3796811
Alignment:
Q  485 gtgaatgtgtattagttcacactttaaactgcaaggtcaatgacatt--------catatgagtgaaagtcgaatcagatctctagcagccaaagcattc 576  Q
    |||||||||||| |||||||||||| || ||||||||||||||||||        |||||||  |||||| |||||||||| ||||| |||||||||||     
T  3796931 gtgaatgtgtatgagttcacacttttaaatgcaaggtcaatgacattgcttcttccatatgatagaaagttgaatcagatcactagcggccaaagcattg 3796832  T
Q  577 aaggtcagtaattgctttctt 597  Q
    ||| || || || ||||||||    
T  3796831 aagttccgttatagctttctt 3796811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 533 - 593
Target Start/End: Original strand, 3961099 - 3961159
Alignment:
Q  533 atatgagtgaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctt 593  Q
    ||||||| |||||| ||| ||||||||||||||||||| |||| ||||| |||||||||||    
T  3961099 atatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgctt 3961159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 358 - 445
Target Start/End: Original strand, 3950699 - 3950786
Alignment:
Q  358 ttcatacagataattccagcatgtaaattgttaagcaactcaacgtttgcccctgctattttatatttaaataatggtgacattaata 445  Q
    |||||||||||| |||||||||||  | ||||  |||| ||||| ||||||||||||||||||||  | ||||||| ||| |||||||    
T  3950699 ttcatacagatatttccagcatgtgtactgtttggcaagtcaacttttgcccctgctattttatacctgaataatgatgagattaata 3950786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 438
Target Start/End: Complemental strand, 4014021 - 4013923
Alignment:
Q  340 catgtcattgtcagatgcttcatacagataattccagcatgtaaattgttaagcaactcaacgtttgcccctgctattttatatttaaataatggtgac 438  Q
    ||||||||||||| ||| || ||||||||||||||| ||| || |  |||  |||| |||||||||| | |||| ||||| ||||| ||||||||||||    
T  4014021 catgtcattgtcacatggttgatacagataattccatcatctatacagtttggcaagtcaacgtttgactctgcaattttttatttgaataatggtgac 4013923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 593
Target Start/End: Complemental strand, 4221283 - 4221238
Alignment:
Q  548 gaatcagatctctagcagccaaagcattcaaggtcagtaattgctt 593  Q
    |||||||||||||||||  ||||||||| |||||||||||||||||    
T  4221283 gaatcagatctctagcaaacaaagcatttaaggtcagtaattgctt 4221238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 595
Target Start/End: Complemental strand, 3822750 - 3822703
Alignment:
Q  548 gaatcagatctctagcagccaaagcattcaaggtcagtaattgctttc 595  Q
    |||||||||||||||||  ||||||||| ||||||||||||| |||||    
T  3822750 gaatcagatctctagcaaacaaagcatttaaggtcagtaatttctttc 3822703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 4014577 - 4014503
Alignment:
Q  312 ttaatatatttaaatttgaagataactgcatgtcattgtca----gatgcttcatacagataattccagcatgta 382  Q
    |||| ||||||| ||||||||||||| ||||||||| ||||    | |  |||||||||||||||||||||||||    
T  4014577 ttaaaatatttatatttgaagataaccgcatgtcatagtcacattgttcattcatacagataattccagcatgta 4014503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 794
Target Start/End: Complemental strand, 13400594 - 13400464
Alignment:
Q  662 cggtaatattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgt 761  Q
    ||||||||  ||||||||||||||||||  || ||| |||| || ||||| ||||||||| ||||| || ||  |||||||||| ||||||| ||||| |    
T  13400594 cggtaataaccttgtgtttcccttattgcgatgttcaaggttcttgagacaaagaaagattgttcatagcgc--ttgttccaatccaatggcatattttt 13400497  T
Q  762 tttccagagcttctcaaataatttatgctgtaa 794  Q
     |||  |||| |||| || ||| ||||||||||    
T  13400496 cttctggagcctctccaacaatatatgctgtaa 13400464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 26619007 - 26619056
Alignment:
Q  67 ttctttcctttgcaaagaaaattgaacaatagaaaggtatctactatctc 116  Q
    ||||||||||||||||  |||||||||||||||||  |||||||||||||    
T  26619007 ttctttcctttgcaaaacaaattgaacaatagaaaattatctactatctc 26619056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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