View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_low_10 (Length: 513)
Name: NF2742_low_10
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 247 - 495
Target Start/End: Complemental strand, 45804181 - 45803933
Alignment:
| Q |
247 |
catagctttgtggcatggatgagcctcttgaaatacctatactaaatgaccttactatggttttgggctctatatctcaggtaatgtgaaattgtgaatt |
346 |
Q |
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| T |
45804181 |
catagctttgtggcatggatgagcctcttgaaatacctatactaaatgaccttactatggttttgggctctatatctcaggtaatgtgaaattgtgaatt |
45804082 |
T |
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| Q |
347 |
agcaacaacaaacttggtattattcaattagtatttctttaatctttttgtatctacaatgactttttgaattgcaatttgcagtccaaggccacagcgg |
446 |
Q |
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| T |
45804081 |
agcaacaacaaacttggtattattcaattagtatttctttaatctttttgtatctacaatgactttttgaattgcaatttgcagtccaaggccacagcgg |
45803982 |
T |
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| Q |
447 |
ttgtagtcgatttcaccgacccttctgcagtgtatgacaatgtaaaaca |
495 |
Q |
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| T |
45803981 |
ttgtagtcgatttcaccgacccttctgcagtgtatgacaatgtaaaaca |
45803933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 45804418 - 45804280
Alignment:
| Q |
10 |
ggagaagcaaaggaaataggaagagcagcagtattggctgtgacaaaggccagaggaatggaagttgctggagctattgatactcaacatgttggggaag |
109 |
Q |
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| T |
45804418 |
ggagcagcaaaggaaataggaagagcagcagtattagctgtgacaaaggccagaggaatggaagttgctggagctattgatactcaacatgttggggaag |
45804319 |
T |
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| Q |
110 |
atattggacaggtttttgtatgagagagcttatgtaaat |
148 |
Q |
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| T |
45804318 |
atattggacaggtttttgtatgagagagcttatgtaaat |
45804280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 7522938 - 7522875
Alignment:
| Q |
273 |
cttgaaatacctatactaaatgaccttactatggttttgggctctatatctcaggtaatgtgaa |
336 |
Q |
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||||||||||| |||||||||||| |||| ||||||||||||||| ||| ||| |||||||||| |
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| T |
7522938 |
cttgaaatacccatactaaatgactttacaatggttttgggctctgtatatcatgtaatgtgaa |
7522875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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