View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_low_12 (Length: 477)
Name: NF2742_low_12
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 6678576 - 6678493
Alignment:
| Q |
178 |
tcatttcatcaaacaactaaaaatatattttaagttggttaaaataataacagtttagcaa-caactttaattttattgataaa |
260 |
Q |
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| T |
6678576 |
tcattttatcaaacaactaaaaatatattttaagttggttaaaataataacaatttgtcaagcaactttagttttattgataaa |
6678493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 6680054 - 6680105
Alignment:
| Q |
178 |
tcatttcatcaaacaactaaaaatatattttaagttggttaaaataataaca |
229 |
Q |
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| T |
6680054 |
tcattttatcaaacaactaaaaatatattttgagttggttaaaataataaca |
6680105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 6848211 - 6848161
Alignment:
| Q |
174 |
tgtgtcatttcatcaaacaactaaaaatatattttaagttggttaaaataa |
224 |
Q |
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| T |
6848211 |
tgtgtcattttatcaaccaactaaaaatatattttaagttggttaaaataa |
6848161 |
T |
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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 8309882 - 8309964
Alignment:
| Q |
192 |
aactaaaaatatattttaagttggttaaaataataacagtttagc-aacaactttaattttattgataaa-ctcttaatattt |
272 |
Q |
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| T |
8309882 |
aactaaaaatatattttaagttggttaaaataataaccgtttagcaaacaactttaactttattaataaagctcttaatattt |
8309964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 8307520 - 8307572
Alignment:
| Q |
170 |
cgtatgtgtcatttcatcaaacaactaaaaatatattttaagttggttaaaata |
223 |
Q |
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| T |
8307520 |
cgtatgtgtcatttcttcagacaacaaaaaatata-tttaagttggttaaaata |
8307572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 273
Target Start/End: Original strand, 8308661 - 8308761
Alignment:
| Q |
175 |
gtgtcatttcatcaaacaac----taaaaatatattttaagttggttaaaataataacagtttagc-aacaactttaattttattgataaa-ctcttaat |
268 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||||| ||| |||||||| |
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| T |
8308661 |
gtgtcatttcatcaaacaacaaaaaaaaaacatattttaagttggtta----aataacagtttggcaaacaactttaactttattggcaaagctcttaat |
8308756 |
T |
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| Q |
269 |
atttg |
273 |
Q |
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||||| |
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|
| T |
8308757 |
atttg |
8308761 |
T |
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