View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_low_17 (Length: 388)
Name: NF2742_low_17
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 202 - 373
Target Start/End: Complemental strand, 24376943 - 24376772
Alignment:
| Q |
202 |
cgtggtttgaggtaggttttgtgcagttttatactcatgaacttgtttaattttgatgtttgttgaagttatgatttgaatgttgacgtgaattttgata |
301 |
Q |
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| T |
24376943 |
cgtggtttgaggtaggttttgtgcagttttatactcatgaacttgtttaattttgatgtttgttgaagttatgatttgaatgttgacgtgaattttgata |
24376844 |
T |
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| Q |
302 |
cttttgaactgaaaattagttaattctagttgttgggatgatttaagagggaaaaacagagaaatatgtgat |
373 |
Q |
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| T |
24376843 |
cttttgaactgaaaattagttaattctagttgttggcatgatttaagagggaaaaacagagaaatatgtgat |
24376772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 24377123 - 24377080
Alignment:
| Q |
22 |
ctgagaaccgttctgaaaagctagtacaattatagtaggtaggg |
65 |
Q |
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| T |
24377123 |
ctgagaaccgttctgaaaagctagtacaattatagtaggtaggg |
24377080 |
T |
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