View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2742_low_20 (Length: 348)
Name: NF2742_low_20
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 36205479 - 36205709
Alignment:
| Q |
22 |
catcatcatattgcgatcagtcggtgctgataagatcaacagagtcaaagaccgatcaacaattgtactgcgcaaggcaaagataatcatgtacagaggt |
121 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36205479 |
catcatcatattgcgagcagtcggtgctgataagatcaacagagtcaaagaaggatcaacaattgtactgcacaaggcaaagataatcatgtacagaggt |
36205578 |
T |
|
| Q |
122 |
tcgatgagacttggtgtttgcagagctgaagacatcgaggaagccccgcctgctgccttcacagtcaaagaagactgtaacttgtctctcatcgaatatg |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36205579 |
tcgatgagacttggtgtttgcagagctgaagacatcgaggaagccccgcctgctgccttcacaatcaaagaagactgtaacttgtctctcatcgaatatg |
36205678 |
T |
|
| Q |
222 |
aacaaattcaagttcaatgttagttatcgtt |
252 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |
|
|
| T |
36205679 |
aacgaattcaagttcaatgttagttatcgtt |
36205709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 36195100 - 36195272
Alignment:
| Q |
49 |
tgataagatcaacagagtcaaagaccgatcaacaattgtactgcgcaaggcaaagataatcatgtacagaggttcgatgagacttggtgtttgcagagct |
148 |
Q |
| |
|
|||||| ||||| |||| ||||| ||||||| |||||| |||||||||||| |||| | ||||| | ||||||||||||||| ||||| ||||||| |
|
|
| T |
36195100 |
tgataaaatcaatcgagtgaaagagggatcaaccattgtagtgcgcaaggcaaggatacttatgtataaaggttcgatgagactcagtgttcgcagagcg |
36195199 |
T |
|
| Q |
149 |
gaagacatcgaggaagcccc---gcctgctgccttcacagtcaaagaagactgtaacttgtctctcatcgaat |
218 |
Q |
| |
|
|||||||| | |||||||| ||||||| |||||| |||||||||||| ||||||| ||| ||||| |||| |
|
|
| T |
36195200 |
gaagacatagtagaagccccggagcctgcttccttcatagtcaaagaagattgtaactggtcgctcattgaat |
36195272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University