View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_low_21 (Length: 341)
Name: NF2742_low_21
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 6508118 - 6507811
Alignment:
| Q |
18 |
taaatggggtgctttaacttggttattcaacaatggatcaactccaatactagattgtttcaatgaggcaagcaatgatatggttgattatcataacgct |
117 |
Q |
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| T |
6508118 |
taaatggggtgctttaacttggttattcaacaatggatcaactccaatactagattgtttcaatgaggcaagcaatgatatggttgattatcataacgct |
6508019 |
T |
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| Q |
118 |
gtcctttttactgcccttcaatctcaagacaactaccttagaattcaagtaagttaagcacttgtttggaattataccaaatcaaaatgaaatatttagt |
217 |
Q |
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| T |
6508018 |
gtcctttttactgcccttcaatctcaagacaactaccttagaattcaagtaagttaagcacatgtttggaattataccaaatcaaaatgaaatatttagt |
6507919 |
T |
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| Q |
218 |
gactttgttgaagcactcaagtgtagtttttaacaaaatcaccgcgattatgtcaaacttaccagaattcaaatatcaacaaaattatacttctttctat |
317 |
Q |
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| T |
6507918 |
gattttgttgaagctctgaagtgtagtttttaacaaaatcaccgcgattatgtcaaacttaccggaattcaaatatcagcaaaattatacttctttctat |
6507819 |
T |
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| Q |
318 |
tggatgtc |
325 |
Q |
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|||||||| |
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| T |
6507818 |
tggatgtc |
6507811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 6502635 - 6502482
Alignment:
| Q |
18 |
taaatggggtgctttaacttggttattcaacaatggatcaactccaatactagattgtttcaatgaggcaagcaatgatatggttgattatcataacgct |
117 |
Q |
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||||||||||||||| || |||||||||||| ||| ||||| ||||| |||||||||||||||| || |||| ||||||||||||||| |||||| | |
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| T |
6502635 |
taaatggggtgctttgacatggttattcaactctggttcaacaccaattatagattgtttcaatgaagctagcactgatatggttgattaccataactca |
6502536 |
T |
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| Q |
118 |
gtcctttttactgcccttcaatctcaagacaactaccttagaattcaagtaagt |
171 |
Q |
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|| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
6502535 |
gttctttttactgcccttcagtctcaagacaactacctcagaattcaagtaagt |
6502482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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