View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2742_low_24 (Length: 321)
Name: NF2742_low_24
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 43770169 - 43769969
Alignment:
| Q |
1 |
ttagaaacacgatgaccctatgagcaccacaacagttttctcagaactcagaactaagccaatatacatactaaacattcacacaaaacattggcgataa |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43770169 |
ttagaaacacgatgaccctaagagcaccacaacagttttctcagaactcagaactaagccaatatacatactaaacaatcacacaaaacattggcgataa |
43770070 |
T |
|
| Q |
101 |
aaacatgaacaaaagaaactattttcccataacgccattgacatttcacagataaaaatcaattcgactaaacatctttcaacaaacagttataggataa |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
43770069 |
aaacatgaacaaaagaaagtattttcccataacgccattgacatttcacagataaaaatcaattcaactaaacatctttcaacaaacagttatagggtaa |
43769970 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
43769969 |
a |
43769969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 42356357 - 42356174
Alignment:
| Q |
11 |
gatgaccctatgagcaccacaacagttttctcagaactcagaactaagccaa-tatacatactaaacattcacacaaaacattggcgataaaaacatgaa |
109 |
Q |
| |
|
||||||||| || ||||||||| ||||||||||||||||||||||| | || ||||||||| ||||| ||| |||||||||||| ||||||| |||||| |
|
|
| T |
42356357 |
gatgaccctgagaacaccacaactgttttctcagaactcagaactaaacaaactatacatacgaaacagtcaaacaaaacattggtgataaaatcatgaa |
42356258 |
T |
|
| Q |
110 |
caaaagaaactattttcccataacgccattgacatttcacagataaaaatcaattcgactaaacatctttcaacaaacagttat |
193 |
Q |
| |
|
||| |||| |||||||||||| | |||||||||||||||| ||||| ||| |||||| ||||||||| |||||| ||||||| |
|
|
| T |
42356257 |
caatagaagctattttcccatgataccattgacatttcacacataaatatctattcgaataaacatctcacaacaaccagttat |
42356174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University