View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_low_25 (Length: 314)
Name: NF2742_low_25
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 85 - 309
Target Start/End: Original strand, 39956982 - 39957205
Alignment:
| Q |
85 |
ttgctaacttaagccactttttggaaggattcaatatatataatttacggcttaaaaattgtgcatttatcatttttaaaaagcgttacttttttatatt |
184 |
Q |
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| T |
39956982 |
ttgctaacttaagccacttgtta-aaggattcaatttatataatttacgtcttaaaaattgtgcatttatcatttttaaaaagcgttactttttaatatt |
39957080 |
T |
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| Q |
185 |
gtaaatcactactacttttaagtgtctttaacctaagaagcttgacgtaattttttgttcgtggtacttaattagggtatttttgtgaaattcttccccc |
284 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39957081 |
gtaaatcactactacatttaagtgtctttaacctaagaagcttgacgtaattttttgttcgtggtacttaattagggtatttttgtgaaattcttccccc |
39957180 |
T |
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| Q |
285 |
atccaagcctcgcacgtgccctatg |
309 |
Q |
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| T |
39957181 |
atccaagcctcgcacgtgccctatg |
39957205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39956894 - 39956955
Alignment:
| Q |
1 |
ctaggttcaattcatgtcttttcctttatcacatcaaatttggttttcctttgttttttaacc |
63 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956894 |
ctaggttca-ttcacgtcttttcctttatcacatcaaatttggttttcctttgttttttaacc |
39956955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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