View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_low_26 (Length: 312)
Name: NF2742_low_26
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 100 - 295
Target Start/End: Complemental strand, 47241163 - 47240968
Alignment:
| Q |
100 |
taatccattgtctattatttttgcaatgaagaatacaagactctgcctctacggttgaaacacccaactttatcttaatttgtaccctttctgttgtcac |
199 |
Q |
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| T |
47241163 |
taatccattgtctattatttttgcaatgaagaatacaagactctgcctctatggttgaaacacccaactttatcttaatttgtaccctttctgctgtcac |
47241064 |
T |
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| Q |
200 |
ctcttaacatctctcttaattattcctgctctagtgctctcttcattgtctcttaannnnnnnnnatgagaggtacggggaaaggagagtaaaatg |
295 |
Q |
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| T |
47241063 |
ctcttaacatctctcttaattattcctgctctagtgctctcttcattgtctcttaatttttttttatgagaggtacggggaaaggagagtaaaatg |
47240968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 47241545 - 47241445
Alignment:
| Q |
1 |
atactacattggttagtgaaacttaaagtgttgttttattgtttatgatttgtatggttgaagtataattgagtcaagtgtaaaggatgcaaaagatatt |
100 |
Q |
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| T |
47241545 |
atactacattggttagtgaaacttaaagtgttgttttattgtttatgatttgtatggttgaagtataattgagtcaagtgtaaaggatgcaaaagatatt |
47241446 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
47241445 |
a |
47241445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 47246239 - 47246000
Alignment:
| Q |
1 |
atactacattggttagtgaaacttaaagtgttgttttattgtttatgatttgtat--ggttgaagtataattgagtcaagtgtaaaggatgcaaaagata |
98 |
Q |
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| T |
47246239 |
atactacattggttagtggaacttataatgttgtttaattgtttatgatatgtatatggtcgaagtataattgaatcaaaagtaaagaacgcaaaagata |
47246140 |
T |
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| Q |
99 |
ttaatccattgtctattatttttgcaatgaagaatacaagactctgc--------ctctacggttgaaacacccaactttatcttaatttgtaccctttc |
190 |
Q |
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| T |
47246139 |
t-accccgttggtttttattttagcaatgaagaatacaagattttgcggttttgcctctatgatcaaaacacccaactttatcttaatttgtaccctttc |
47246041 |
T |
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| Q |
191 |
tgttgtcacctcttaacatctctcttaattattcctgctct |
231 |
Q |
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| T |
47246040 |
ttttgtcacctcttcgcatctttcttaattattcctgctct |
47246000 |
T |
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