View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2742_low_27 (Length: 305)

Name: NF2742_low_27
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2742_low_27
NF2742_low_27
[»] chr2 (3 HSPs)
chr2 (263-296)||(41543657-41543690)
chr2 (263-296)||(29432932-29432965)
chr2 (258-295)||(31072666-31072703)
[»] chr5 (6 HSPs)
chr5 (264-296)||(39527431-39527463)
chr5 (261-295)||(8050384-8050418)
chr5 (257-286)||(8143809-8143838)
chr5 (262-295)||(9577688-9577721)
chr5 (264-296)||(5847054-5847086)
chr5 (260-296)||(41348983-41349019)
[»] chr1 (4 HSPs)
chr1 (259-295)||(27288900-27288936)
chr1 (263-296)||(83155-83188)
chr1 (259-296)||(290521-290558)
chr1 (263-296)||(42219836-42219869)
[»] chr7 (7 HSPs)
chr7 (264-295)||(27116663-27116694)
chr7 (257-295)||(32467800-32467838)
chr7 (263-296)||(40537030-40537063)
chr7 (263-295)||(7560441-7560473)
chr7 (260-296)||(31466044-31466080)
chr7 (264-296)||(31582229-31582261)
chr7 (263-295)||(42940923-42940955)
[»] chr3 (1 HSPs)
chr3 (262-296)||(31289333-31289367)
[»] chr8 (5 HSPs)
chr8 (263-296)||(7884538-7884571)
chr8 (263-296)||(26513688-26513721)
chr8 (263-291)||(1513579-1513607)
chr8 (260-296)||(15225836-15225872)
chr8 (263-295)||(35455406-35455438)
[»] chr6 (2 HSPs)
chr6 (263-296)||(31022635-31022668)
chr6 (264-296)||(29017027-29017059)
[»] chr4 (4 HSPs)
chr4 (259-296)||(27851162-27851199)
chr4 (264-296)||(18872462-18872494)
chr4 (263-295)||(32402677-32402709)
chr4 (263-295)||(47477224-47477256)


Alignment Details
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 41543657 - 41543690
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgctttg 296  Q
    ||||||||||||||||||||||||||||||||||    
T  41543657 atactccctccgtcctaaattatatgtcgctttg 41543690  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 29432965 - 29432932
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgctttg 296  Q
    ||||||||||||||| ||||||||||||||||||    
T  29432965 atactccctccgtcccaaattatatgtcgctttg 29432932  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 31072703 - 31072666
Alignment:
Q  258 aaataatactccctccgtcctaaattatatgtcgcttt 295  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  31072703 aaataatactccctccgtcccaaattgtatgtcgcttt 31072666  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 39527431 - 39527463
Alignment:
Q  264 tactccctccgtcctaaattatatgtcgctttg 296  Q
    |||||||||||||||||||||||||||||||||    
T  39527431 tactccctccgtcctaaattatatgtcgctttg 39527463  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 295
Target Start/End: Original strand, 8050384 - 8050418
Alignment:
Q  261 taatactccctccgtcctaaattatatgtcgcttt 295  Q
    ||||||||||||||||||||||| |||||||||||    
T  8050384 taatactccctccgtcctaaattgtatgtcgcttt 8050418  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 8143809 - 8143838
Alignment:
Q  257 aaaataatactccctccgtcctaaattata 286  Q
    ||||||||||||||||||||||||||||||    
T  8143809 aaaataatactccctccgtcctaaattata 8143838  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Complemental strand, 9577721 - 9577688
Alignment:
Q  262 aatactccctccgtcctaaattatatgtcgcttt 295  Q
    |||||||||||||||| |||||||||||||||||    
T  9577721 aatactccctccgtcccaaattatatgtcgcttt 9577688  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 5847086 - 5847054
Alignment:
Q  264 tactccctccgtcctaaattatatgtcgctttg 296  Q
    |||||||||||||||||||| ||||||||||||    
T  5847086 tactccctccgtcctaaattgtatgtcgctttg 5847054  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 41349019 - 41348983
Alignment:
Q  260 ataatactccctccgtcctaaattatatgtcgctttg 296  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  41349019 ataatacttcctccgtcctaaattgtatgtcgctttg 41348983  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 27288936 - 27288900
Alignment:
Q  259 aataatactccctccgtcctaaattatatgtcgcttt 295  Q
    ||||||||||||||||||| |||||||||||||||||    
T  27288936 aataatactccctccgtcccaaattatatgtcgcttt 27288900  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 83188 - 83155
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgctttg 296  Q
    ||||||||||||||||||||| ||||||||||||    
T  83188 atactccctccgtcctaaattgtatgtcgctttg 83155  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 290558 - 290521
Alignment:
Q  259 aataatactccctccgtcctaaattatatgtcgctttg 296  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  290558 aataatactccctccgtcccaaattgtatgtcgctttg 290521  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 42219869 - 42219836
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgctttg 296  Q
    ||||||||||||||||||||| ||||||||||||    
T  42219869 atactccctccgtcctaaattgtatgtcgctttg 42219836  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 295
Target Start/End: Complemental strand, 27116694 - 27116663
Alignment:
Q  264 tactccctccgtcctaaattatatgtcgcttt 295  Q
    ||||||||||||||||||||||||||||||||    
T  27116694 tactccctccgtcctaaattatatgtcgcttt 27116663  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 32467800 - 32467838
Alignment:
Q  257 aaaataatactccctccgtcctaaattatatgtcgcttt 295  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  32467800 aaaataatactccctccgtcccaaattgtatgtcgcttt 32467838  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 40537063 - 40537030
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgctttg 296  Q
    ||||||||||||||| ||||||||||||||||||    
T  40537063 atactccctccgtcccaaattatatgtcgctttg 40537030  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 7560473 - 7560441
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgcttt 295  Q
    |||||||||||||||||||||||| ||||||||    
T  7560473 atactccctccgtcctaaattataggtcgcttt 7560441  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 31466044 - 31466080
Alignment:
Q  260 ataatactccctccgtcctaaattatatgtcgctttg 296  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  31466044 ataatactccctccgtcccaaattgtatgtcgctttg 31466080  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 31582261 - 31582229
Alignment:
Q  264 tactccctccgtcctaaattatatgtcgctttg 296  Q
    ||||||||||||||||||||||||||| |||||    
T  31582261 tactccctccgtcctaaattatatgtcactttg 31582229  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 42940923 - 42940955
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgcttt 295  Q
    ||||||||||||||| |||||||||||||||||    
T  42940923 atactccctccgtcccaaattatatgtcgcttt 42940955  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 31289367 - 31289333
Alignment:
Q  262 aatactccctccgtcctaaattatatgtcgctttg 296  Q
    |||||||||||||||| ||||||||||||||||||    
T  31289367 aatactccctccgtcccaaattatatgtcgctttg 31289333  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 7884571 - 7884538
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgctttg 296  Q
    ||||||||||||||||||||| ||||||||||||    
T  7884571 atactccctccgtcctaaattgtatgtcgctttg 7884538  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 26513688 - 26513721
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgctttg 296  Q
    ||||||||||||||||||||| ||||||||||||    
T  26513688 atactccctccgtcctaaattgtatgtcgctttg 26513721  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 291
Target Start/End: Complemental strand, 1513607 - 1513579
Alignment:
Q  263 atactccctccgtcctaaattatatgtcg 291  Q
    |||||||||||||||||||||||||||||    
T  1513607 atactccctccgtcctaaattatatgtcg 1513579  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 15225836 - 15225872
Alignment:
Q  260 ataatactccctccgtcctaaattatatgtcgctttg 296  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  15225836 ataatactccctccgtcccaaattgtatgtcgctttg 15225872  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 35455406 - 35455438
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgcttt 295  Q
    ||||||||||||||| |||||||||||||||||    
T  35455406 atactccctccgtcccaaattatatgtcgcttt 35455438  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 31022668 - 31022635
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgctttg 296  Q
    ||||||||||||||||||||| ||||||||||||    
T  31022668 atactccctccgtcctaaattgtatgtcgctttg 31022635  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 29017027 - 29017059
Alignment:
Q  264 tactccctccgtcctaaattatatgtcgctttg 296  Q
    |||||||||||||| ||||||||||||||||||    
T  29017027 tactccctccgtcccaaattatatgtcgctttg 29017059  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 27851162 - 27851199
Alignment:
Q  259 aataatactccctccgtcctaaattatatgtcgctttg 296  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  27851162 aataatactccctccgtcccaaattgtatgtcgctttg 27851199  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 18872494 - 18872462
Alignment:
Q  264 tactccctccgtcctaaattatatgtcgctttg 296  Q
    |||||||||||||||||||| ||||||||||||    
T  18872494 tactccctccgtcctaaattgtatgtcgctttg 18872462  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 32402677 - 32402709
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgcttt 295  Q
    ||||||||||||||||||||| |||||||||||    
T  32402677 atactccctccgtcctaaattgtatgtcgcttt 32402709  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 47477256 - 47477224
Alignment:
Q  263 atactccctccgtcctaaattatatgtcgcttt 295  Q
    ||||||||||||| |||||||||||||||||||    
T  47477256 atactccctccgttctaaattatatgtcgcttt 47477224  T

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