View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_low_6 (Length: 631)
Name: NF2742_low_6
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 38 - 613
Target Start/End: Original strand, 36657663 - 36658240
Alignment:
| Q |
38 |
tagattattctcaagaaaatgtttgtgaagcactttatatggtcgaaactttaagtctcttatagttggttgtactaccctctaatgatagattcattag |
137 |
Q |
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| T |
36657663 |
tagattattctcaagaaaatgtttgtgaagcactttatatggtcgaaactttaagtctcttatagttggttgtactaccctctaatgatagattcattag |
36657762 |
T |
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| Q |
138 |
taagaaatgagtagacaaatttttatatctaggatgagacaatgtcgaatgaaatgatgacattgttttgacaagtttcatgttttaaaaatggaattgt |
237 |
Q |
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| T |
36657763 |
taagaaatgagtggacaaatttttatatctaggatgagacaatgtcgaatgaaatgatgacattgttttgacaagtttcatgttttaaaaatggaattgt |
36657862 |
T |
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| Q |
238 |
taacattaaacttctctgtggttgagtttgattattccagacaaatggtatcatgtttgtctacacttacatcataaaccacacatatcttattcacgtt |
337 |
Q |
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| T |
36657863 |
taacattaaacttctctgtggttgagtttgattatcccagacaaatggtatcatgtttgtctacacttacatcataaaccacacatatcttattcacgtt |
36657962 |
T |
|
| Q |
338 |
ttgctttaaagatcgcttttggtgttgagaaatcacagtattgcggat--gnnnnnnnnnngaatacataagaacttcattatagaaatttgcggtaacc |
435 |
Q |
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| T |
36657963 |
ttgctttaaagatcgcttttggtgttgagaaatcacagtattgcggatgagaaaaaaaaaaaaatacataagaacttcattatagaaatttgcggtaacc |
36658062 |
T |
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| Q |
436 |
aaaataattactaaataataatatacatatgctatttagaggtatatatcgtcactacattttaggtctatnnnnnnnngaacctttgccttgtaattgt |
535 |
Q |
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| T |
36658063 |
aaaataattactaaataataatatacatatgctatttagaggtatatatcgtcactacattttaggtctataaaataaagaacctttgccttgtaattgt |
36658162 |
T |
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| Q |
536 |
ttacatgctggagagcatgcatcttggcaaagtgaatcttctgcaaatttgattttcaagcatatggacatgcattgt |
613 |
Q |
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| T |
36658163 |
ttacatgctggagagcatgcatcttggcaaagtgaatcttctgcaaatttgattttcaagcatatggacatgcattgt |
36658240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 516 - 613
Target Start/End: Original strand, 13032290 - 13032387
Alignment:
| Q |
516 |
aacctttgccttgtaattgtttacatgctggagagcatgcatcttggcaaagtgaatcttctgcaaatttgattttcaagcatatggacatgcattgt |
613 |
Q |
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| T |
13032290 |
aacctttgcctttcaattgtttacatgctggagagcaagcttcttgacaaagtgaaacttgtgcaagtttgattttcaagcatatagacatgcattgt |
13032387 |
T |
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