View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2742_low_7 (Length: 594)
Name: NF2742_low_7
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2742_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 257
Target Start/End: Original strand, 39092182 - 39092435
Alignment:
| Q |
2 |
caaaaataatgtgatgatatgctagcctgatggcccatttgagggaacttaataagcccaaagtactttctactttccacccctacctccaaatttgcaa |
101 |
Q |
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| T |
39092182 |
caaaaataatgtgatgatatgctagcctgatggcccatttgagggaacttaataagcccaaagtactttctactttccacccctacctccaaatttgcaa |
39092281 |
T |
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| Q |
102 |
atggatatttaaagtaaaaaattcttataatttgccaggnnnnnnnaattccgaattttagaaaaatctggaaatcattaataatcccgannnnnnnaag |
201 |
Q |
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| T |
39092282 |
at-gatatttaaagtaaaaaattcttataatttgccaggtttttttaagtccgaattttagaaaaatctggaaatcattaataatcccgatttttttaag |
39092380 |
T |
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| Q |
202 |
ttaatatttcaactgaaaaactccaaaagttgttaattttaatattttcagatttc |
257 |
Q |
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| T |
39092381 |
ttaatatttcaactaaaaaactccaaaagttgttaattttaata-tttcagatttc |
39092435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 433 - 578
Target Start/End: Original strand, 39092611 - 39092756
Alignment:
| Q |
433 |
gagagaccaaattttgtttattcgatcagggttgccatctttaattcttaccgtgcatttttattttagaaaatatgtatttgatactgattcaaaatga |
532 |
Q |
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| T |
39092611 |
gagagaccaaattttgtttattcgatcagtgttgccatctttaattcttaccgtgcatttttattttagaaaatatgtatttgatactgattcaaaatga |
39092710 |
T |
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| Q |
533 |
gggtgaatatttaagcattgaagtgtatgttttattcgatttaagt |
578 |
Q |
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| T |
39092711 |
gggtgaatatttaagcattgaagtgtatgttttattcgatttaagt |
39092756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 351
Target Start/End: Original strand, 39092500 - 39092529
Alignment:
| Q |
322 |
gataacataccatatacctattttttcttt |
351 |
Q |
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| T |
39092500 |
gataacataccatatacctattttttcttt |
39092529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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