View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2742_low_8 (Length: 574)

Name: NF2742_low_8
Description: NF2742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2742_low_8
NF2742_low_8
[»] chr1 (24 HSPs)
chr1 (4-558)||(29812735-29813289)
chr1 (40-188)||(48040150-48040296)
chr1 (62-190)||(48049382-48049509)
chr1 (64-192)||(48055917-48056044)
chr1 (62-178)||(48053114-48053230)
chr1 (40-181)||(48042819-48042958)
chr1 (90-193)||(48041296-48041399)
chr1 (64-193)||(48035730-48035861)
chr1 (64-166)||(48050608-48050712)
chr1 (89-167)||(5126502-5126580)
chr1 (89-167)||(48033101-48033179)
chr1 (90-165)||(39972782-39972857)
chr1 (89-166)||(22908323-22908400)
chr1 (67-188)||(29813623-29813743)
chr1 (94-167)||(48034709-48034782)
chr1 (84-179)||(48048628-48048724)
chr1 (40-155)||(48054322-48054435)
chr1 (94-165)||(48042225-48042296)
chr1 (266-461)||(48040850-48041045)
chr1 (93-167)||(48054677-48054751)
chr1 (89-162)||(48050016-48050089)
chr1 (89-161)||(48036725-48036797)
chr1 (365-515)||(48049092-48049238)
chr1 (264-420)||(48035319-48035481)
[»] chr3 (7 HSPs)
chr3 (90-173)||(31125745-31125828)
chr3 (89-165)||(34974803-34974879)
chr3 (90-165)||(53107639-53107714)
chr3 (94-167)||(47565677-47565750)
chr3 (94-165)||(38930471-38930542)
chr3 (94-165)||(53682982-53683053)
chr3 (105-156)||(32170503-32170554)
[»] chr2 (7 HSPs)
chr2 (88-166)||(35926119-35926197)
chr2 (90-166)||(6796496-6796572)
chr2 (89-165)||(6801049-6801125)
chr2 (90-165)||(39990580-39990655)
chr2 (94-166)||(7181563-7181635)
chr2 (94-165)||(13326996-13327067)
chr2 (93-166)||(35920133-35920206)
[»] chr4 (3 HSPs)
chr4 (89-165)||(38393558-38393634)
chr4 (89-167)||(49152530-49152608)
chr4 (103-160)||(26929298-26929355)
[»] chr7 (4 HSPs)
chr7 (90-165)||(43920607-43920682)
chr7 (94-165)||(23780469-23780540)
chr7 (89-165)||(40706106-40706182)
chr7 (103-160)||(46064797-46064854)
[»] chr6 (6 HSPs)
chr6 (93-166)||(10754596-10754669)
chr6 (93-165)||(992441-992513)
chr6 (94-166)||(10750280-10750352)
chr6 (94-165)||(18613088-18613159)
chr6 (111-166)||(32678635-32678690)
chr6 (94-166)||(10748684-10748756)


Alignment Details
Target: chr1 (Bit Score: 505; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 4 - 558
Target Start/End: Original strand, 29812735 - 29813289
Alignment:
Q  4 atctcgaagaatatataaaaaacactgatacttattttatttgtatttgattaaaaagtattgaaaagtaaaactcctaaccttcaaaaaggggcattcc 103  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29812735 atcttgaacaataaataaaaaacactgatacttattttatttgtatttgattaaaaagtattgaaaagttaaactcctaaccttcaaaaaggggcattcc 29812834  T
Q  104 gagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgacatgcaaagttattgtttgtgaatctgttagtgag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29812835 gagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgacatgcaaagttattgtttgtgaatctgttagtgag 29812934  T
Q  204 acaaaagcttaatttacaataaaattatacatagtttgatttgaatgttcttttgcctaaatatatataggcaaaatatggacctctaagcatttgttaa 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29812935 acaaaagcttaatttacaataaaattatacatagtttgatttgaatgttcttttgcctaaatatatataggcaaaatatggacctctaagcatttgttaa 29813034  T
Q  304 tagttttgttactagtttttcatggtttttctctacatctagcaattgggcaccatccatatgatttattctccttattacagaatttatagatttcctc 403  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29813035 tagttttgttaatagtttttcatggtttttctctacatctagcaattgggcaccatccatatgatttattctccttattacagaatttatagatttcctc 29813134  T
Q  404 cacacatgtccaaaccacctaaatctagatttaagcatcgtatatacaataggtgctaattcgctaccccaattctctctctttaatggtattattattc 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29813135 cacacatgtccaaaccacctaaatctagatttaagcatcgtatatacaataggtgctaattcgctaccccaattctctctctttaatggtattattattc 29813234  T
Q  504 ctattcccatcttcatcnnnnnnnnnngttagggatccttcctcgtctagtattt 558  Q
    |||||||||||||||||          ||||||||||||||||||||||||||||    
T  29813235 ctattcccatcttcatcttttttttttgttagggatccttcctcgtctagtattt 29813289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 48040296 - 48040150
Alignment:
Q  40 ttatttgtatttgattaaaaagtattgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcga 139  Q
    |||||||||||| | |||||  |||| |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48040296 ttatttgtatttaactaaaa--tattaaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcga 48040199  T
Q  140 gaatcataccactagaccaaatgccctgacatgcaaagttattgtttgt 188  Q
    ||||||||||||||||||||||||||||| ||| |||||| | ||||||    
T  48040198 gaatcataccactagaccaaatgccctgatatgaaaagttttagtttgt 48040150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 48049509 - 48049382
Alignment:
Q  62 tattgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 161  Q
    ||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48049509 tattggaaagttaacctcctaaccttcaaaa-ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 48049411  T
Q  162 gccctgacatgcaaagttattgtttgtga 190  Q
    ||||| | ||| |||||||||||||||||    
T  48049410 gcccttatatgaaaagttattgtttgtga 48049382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 48056044 - 48055917
Alignment:
Q  64 ttgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgc 163  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48056044 ttgaaaaataaaactcctaaccttcaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgc 48055945  T
Q  164 cctgacatgcaaagttattgtttgtgaat 192  Q
    ||||  ||| |||||| ||||||||||||    
T  48055944 cctgctatgaaaagtt-ttgtttgtgaat 48055917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 62 - 178
Target Start/End: Complemental strand, 48053230 - 48053114
Alignment:
Q  62 tattgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 161  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48053230 tattgaaaagttaaacttctaaccttcaaaaaggggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagaccaaat 48053131  T
Q  162 gccctgacatgcaaagt 178  Q
    ||||||| ||| |||||    
T  48053130 gccctgatatgaaaagt 48053114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 48042958 - 48042819
Alignment:
Q  40 ttatttgtatttgattaaaaagtattgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcga 139  Q
    |||||||||||| | ||||| ||  |||||| |||||| |||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||    
T  48042958 ttatttgtatttaactaaaatgt--tgaaaaataaaacccctaaccttcaaaaaggggcattcagagaatcgaactccgggcctctcgcacccaaagcga 48042861  T
Q  140 gaatcataccactagaccaaatgccctgacatgcaaagttat 181  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  48042860 gaatcataccactagaccaaatgccctgatatgaaaagttat 48042819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 48041399 - 48041296
Alignment:
Q  90 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgacatgcaaagttattgtttgtg 189  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||    
T  48041399 aaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgcccttatatgaaaagttattgtttgtg 48041300  T
Q  190 aatc 193  Q
    ||||    
T  48041299 aatc 48041296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 48035861 - 48035730
Alignment:
Q  64 ttgaaaagtaaaactcctaaccttca--aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 161  Q
    ||||||| | |||||| |||||||||  ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48035861 ttgaaaatttaaactcttaaccttcacaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaat 48035762  T
Q  162 gccctgacatgcaaagttattgtttgtgaatc 193  Q
    ||||||| ||| ||| |||| ||| |||||||    
T  48035761 gccctgatatgaaaaattatagttagtgaatc 48035730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 48050712 - 48050608
Alignment:
Q  64 ttgaaaagtaaaactcctaaccttcaaaaa--ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 161  Q
    ||||||| |||||||||||||||||| |||  ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48050712 ttgaaaaataaaactcctaaccttcacaaaagggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaat 48050613  T
Q  162 gccct 166  Q
    |||||    
T  48050612 gccct 48050608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 5126580 - 5126502
Alignment:
Q  89 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 167  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5126580 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 5126502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 48033179 - 48033101
Alignment:
Q  89 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 167  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48033179 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 48033101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 39972782 - 39972857
Alignment:
Q  90 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39972782 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39972857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 22908400 - 22908323
Alignment:
Q  89 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 166  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  22908400 aaaaaggggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 22908323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 67 - 188
Target Start/End: Original strand, 29813623 - 29813743
Alignment:
Q  67 aaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 166  Q
    |||||| |||||| |||||||||||| |||||| || |  |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29813623 aaaagttaaactcttaaccttcaaaa-ggggcactcagcaaatcgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 29813721  T
Q  167 gacatgcaaagttattgtttgt 188  Q
    || ||| |||||| | ||||||    
T  29813722 gatatgaaaagttttagtttgt 29813743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 48034782 - 48034709
Alignment:
Q  94 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 167  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48034782 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 48034709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 48048724 - 48048628
Alignment:
Q  84 ccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccacta-gaccaaatgccctgacatgcaaagtt 179  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||||||    
T  48048724 ccttcaaaagggggcattccgagaatcaaacttgggacctctcgcacccaaagcgagaatgataccactaggaccaaatgccctgatatgaaaagtt 48048628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 48054435 - 48054322
Alignment:
Q  40 ttatttgtatttgattaaaaagtattgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcga 139  Q
    |||||||||||| | |||||  ||||||||||| |||||||| |||||| ||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  48054435 ttatttgtatttaactaaaa--tattgaaaagttaaactcctgaccttcgaaaagcggcattctgagaatcgaactcaggacctctcgcacccaaagcga 48054338  T
Q  140 gaatcataccactaga 155  Q
    |||||||  |||||||    
T  48054337 gaatcatttcactaga 48054322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 48042296 - 48042225
Alignment:
Q  94 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48042296 ggggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 48042225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 266 - 461
Target Start/End: Complemental strand, 48041045 - 48040850
Alignment:
Q  266 atatataggcaaaatatggacctctaagcatttgttaatagttttgttac-----tagtttttcatggtttttctctacatctagcaattg-ggcaccat 359  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| |     || |||||||||||||||||||||||| | | | ||   ||||||    
T  48041045 atatatagccaaaatatggacgtctaagcatttgttaatagttttgtttcgttcatattttttcatggtttttctctacatcaatcgactgaaccaccat 48040946  T
Q  360 ccatatgatttattctccttattacagaatttatagatttcctccacacatgtccaaaccacctaaatctagatttaagcatcgtatatacaataggtgc 459  Q
    |||| |||| ||||||||||| ||      | ||||||||||||||||||||||||||||| |||| ||  ||||||| |||| ||| |||||| |||||    
T  48040945 ccatgtgatctattctccttacta------taatagatttcctccacacatgtccaaaccagctaagtcgggatttaaccatcttatttacaattggtgc 48040852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 48054751 - 48054677
Alignment:
Q  93 aggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 167  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  48054751 aggggcattccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatgccctg 48054677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 48050089 - 48050016
Alignment:
Q  89 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 162  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  48050089 aaaatggggcattccgagaatcgaactcggaacctctcacacccaaagcgagaatcataccactagaccaaatg 48050016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 48036797 - 48036725
Alignment:
Q  89 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 161  Q
    |||||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  48036797 aaaaaggggcattcggagaatcaaactccggacctctggcacccaaagcgagaatcataccactagaccaaat 48036725  T

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Target: chr1; HSP #23
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 365 - 515
Target Start/End: Complemental strand, 48049238 - 48049092
Alignment:
Q  365 tgatttattctccttattacagaatttatagatttcctccacacatgtccaaaccacctaaatctagatttaagcatcgtatatacaataggtgctaatt 464  Q
    |||| |||||| |||| || ||||| |||||||||||| ||||||||||||||||| |||| || |||||||| |||| ||| |||||| |||||||  |    
T  48049238 tgatctattcttcttactatagaatctatagatttccttcacacatgtccaaaccagctaagtcgagatttaaccatcttat-tacaattggtgctagct 48049140  T
Q  465 cgctaccccaattctctctctttaatggtattattattcctattcccatct 515  Q
     |||| ||||| || ||||||||||||   ||||| |||||||||| ||||    
T  48049139 tgctagcccaactccctctctttaatg---ttattgttcctattcctatct 48049092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 420
Target Start/End: Complemental strand, 48035481 - 48035319
Alignment:
Q  264 atatatataggcaaaatatggacctctaagcatttgttaatagttttgttactagtttttcatggtttttctctacatctagcaattggg-caccatcca 362  Q
    |||||||||| |||||| |||| || ||||||||||| ||||||||   || ||| ||||||| | |||||||||||||||   |||||| |||||| ||    
T  48035481 atatatatagccaaaatttggatctataagcatttgtaaatagtttcactagtaggttttcatag-ttttctctacatctactgattgggccaccattca 48035383  T
Q  363 tatgatttattctccttattacagaat------ttatagatttcctccacacatgtccaaacca 420  Q
    |||| ||||||||||||| |  ||| |      |||||||||||||||||||||||||||||||    
T  48035382 tatggtttattctccttactctagatttatagattatagatttcctccacacatgtccaaacca 48035319  T

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Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 31125828 - 31125745
Alignment:
Q  90 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgacatgc 173  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  31125828 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccttacatgc 31125745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 34974879 - 34974803
Alignment:
Q  89 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974879 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 34974803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 53107714 - 53107639
Alignment:
Q  90 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53107714 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 53107639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 47565677 - 47565750
Alignment:
Q  94 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 167  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47565677 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 47565750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 38930471 - 38930542
Alignment:
Q  94 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38930471 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38930542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 53683053 - 53682982
Alignment:
Q  94 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53683053 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 53682982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 32170554 - 32170503
Alignment:
Q  105 agaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagac 156  Q
    |||||| |||| | |||||||||||||| |||| ||||||||||||||||||    
T  32170554 agaatcaaacttgcgacctctcgcaccccaagctagaatcataccactagac 32170503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 35926119 - 35926197
Alignment:
Q  88 caaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 166  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35926119 caaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 35926197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 6796572 - 6796496
Alignment:
Q  90 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 166  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796572 aaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 6796496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 6801049 - 6801125
Alignment:
Q  89 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6801049 aaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 6801125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 39990655 - 39990580
Alignment:
Q  90 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39990655 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39990580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 7181635 - 7181563
Alignment:
Q  94 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 166  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7181635 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 7181563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 13326996 - 13327067
Alignment:
Q  94 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13326996 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 13327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 35920133 - 35920206
Alignment:
Q  93 aggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 166  Q
    ||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||||||| |||||||    
T  35920133 aggggcattccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagaccagatgccct 35920206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 38393558 - 38393634
Alignment:
Q  89 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38393558 aaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38393634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 49152530 - 49152608
Alignment:
Q  89 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 167  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49152530 aaaatggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 49152608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 26929298 - 26929355
Alignment:
Q  103 cgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaa 160  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  26929298 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 26929355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 43920682 - 43920607
Alignment:
Q  90 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43920682 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 43920607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 23780540 - 23780469
Alignment:
Q  94 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23780540 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 23780469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 40706182 - 40706106
Alignment:
Q  89 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    |||| |||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  40706182 aaaatggggcattccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatgccc 40706106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 46064797 - 46064854
Alignment:
Q  103 cgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaa 160  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  46064797 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 46064854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 10754596 - 10754669
Alignment:
Q  93 aggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 166  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10754596 aggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 10754669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 992441 - 992513
Alignment:
Q  93 aggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  992441 aggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 992513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 10750280 - 10750352
Alignment:
Q  94 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 166  Q
    |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||    
T  10750280 ggggcattccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatgccct 10750352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 18613159 - 18613088
Alignment:
Q  94 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 165  Q
    ||||||||||||||||  ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||    
T  18613159 ggggcattccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactagatcaaatgccc 18613088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 32678635 - 32678690
Alignment:
Q  111 gaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 166  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32678635 gaactcaggacctctcacacccaaagcgagaatcataccactagaccaaatgccct 32678690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 10748684 - 10748756
Alignment:
Q  94 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 166  Q
    |||||||||||||||| || |||| |||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  10748684 ggggcattccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatgccct 10748756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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