View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2743_high_1 (Length: 715)
Name: NF2743_high_1
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2743_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 262 - 697
Target Start/End: Original strand, 47476232 - 47476666
Alignment:
| Q |
262 |
aatcttgggttgagaaatgtgctacctccggaggtgtctacgttatgtgtgatgtgcaatgcgaaggaggaatcgacgcttcatctctttttacattgtg |
361 |
Q |
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| T |
47476232 |
aatcttgcgttgaggaatgtgttaccaccggaagcgtctacgttatgtgtgatgtgcaatgtgaaggaagaatcggcgttacacctctttctacattgtg |
47476331 |
T |
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| Q |
362 |
atgtagcaagttgggtatggcttaagttagatgttatggttgaattgtagtttcctcacacctccaaacttctttattcattgggaatgttggagtgccg |
461 |
Q |
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| T |
47476332 |
acgttgcggttttggtgtggcgtacttt-gatgatgtggttgaattgtagctttttcacacctccaaatttctttgttcattgggaatgttggagtgttg |
47476430 |
T |
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| Q |
462 |
gaggaaattccaaaaaattaactaagggaatgtggttaatttggcatacttctatttgggttttgtggtgtaggaggaatgataagatcttcaagggaat |
561 |
Q |
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| T |
47476431 |
ggggaaattctaaaaaagttaccaaaggattttggttaatttggcacacaacgatttgggttttgtggaataggagaaatgataagatcttcaaggggag |
47476530 |
T |
|
| Q |
562 |
aaactttgaggtggatgatttggtggaggaaatcaaagtgttatcatggtgatggatgttggaaagattaaacactccctcttgtcttttttatgaatgg |
661 |
Q |
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| T |
47476531 |
gaattttgaggtggaggaattggttgaggaaatcaaagtgttatcttggagatggatgttggaaagattgaacaatccgtcttgtcttttttatgaatga |
47476630 |
T |
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| Q |
662 |
tgttggaatccaaggttttgccttgatagatagtgg |
697 |
Q |
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| T |
47476631 |
tgttggaatccgaggttttgccttgatagatagtgg |
47476666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 43073956 - 43073923
Alignment:
| Q |
425 |
ccaaacttctttattcattgggaatgttggagtg |
458 |
Q |
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| T |
43073956 |
ccaaacttgtttattcattgggaatgttggagtg |
43073923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 270 - 698
Target Start/End: Complemental strand, 8504716 - 8504288
Alignment:
| Q |
270 |
gttgagaaatgtgctacctccggaggtgtctacgttatgtgtgatgtgcaatgcgaaggaggaatcgacgcttcatctctttttacattgtgatgtagca |
369 |
Q |
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| T |
8504716 |
gttgaggaatgtgctaccgccggaggtttctccgttgtgtgtcatgtgtaatctaaaggaggaatcggcgctacatcttttcttacattgtgatgtggcg |
8504617 |
T |
|
| Q |
370 |
agttgggtat-ggcttaagttagatgttatggttgaattgtagtttcctcacacctccaaacttctttattcattgggaatgttggagtgccggaggaaa |
468 |
Q |
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| T |
8504616 |
tgtgcggttttggctcaaatta-atggtgtggttgaatttttggtttttaacccctccaaatttcgttattcattgggaatgttggagtgtagggggtaa |
8504518 |
T |
|
| Q |
469 |
ttccaaaaaattaactaagggaatgtggttaatttggcatacttctatttgggttttgtggtgtaggaggaatgataagatcttcaagggaataaacttt |
568 |
Q |
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| T |
8504517 |
ttcaaaaaaggtaacaaaaggcttgtggctaatttggcacactacaatatgggtgctatggaataggcgtaatgagaagattttcaatgggaggaatgtt |
8504418 |
T |
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| Q |
569 |
gaggtggatgatttggtggaggaaatcaaagtgttatcatggtgatggatgttggaaagattaaacactccctcttgtcttttttatgaatggtgttgga |
668 |
Q |
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| T |
8504417 |
gaggtagaggaattggtggacgagattaaagtgttatcatggcgatggatgttagaaagattgcacactccctcttgccttttttatgagtgaatttgga |
8504318 |
T |
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| Q |
669 |
atccaaggttttgccttgatagatagtggt |
698 |
Q |
| |
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| T |
8504317 |
atccaaggttttgccttgatagataatggt |
8504288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 52391578 - 52391653
Alignment:
| Q |
1 |
ttgagagtttaaaaggtatgagaagggatggcttcagaggtggaaaatataggagggaatgtggaaatcttgtaca |
76 |
Q |
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| T |
52391578 |
ttgagagtttgaaaggtatgagaagggatgacttcagagttggaaaatataggagggaatgtggaaatcttgtaca |
52391653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 52393037 - 52393099
Alignment:
| Q |
115 |
acaagattaaatgacgaagcatagaagtacttttactaaaagataagactagttgtttagcag |
177 |
Q |
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| T |
52393037 |
acaagattaaatgacgaagcatagaagtacttttactaaaagataagactagttgtttagcag |
52393099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 52393122 - 52393166
Alignment:
| Q |
219 |
agacactagaggatgcaatttgccaatagaactagggcaagacaa |
263 |
Q |
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| T |
52393122 |
agacactagaggatgcaatttgccaatagaactagggcaagacaa |
52393166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 494 - 686
Target Start/End: Complemental strand, 31035096 - 31034904
Alignment:
| Q |
494 |
tggttaatttggcatacttctatttgggttttgtggtgtaggaggaatgataagatcttcaagggaataaactttgaggtggatgatttggtggaggaaa |
593 |
Q |
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|||||||||| ||| || ||||||||||||||||| | ||| ||||| | ||| |||||||||||||||||||||||||| || ||||| | || | |
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| T |
31035096 |
tggttaatttagcacacaactatttgggttttgtggaaaacgagaaatgacatgattttcaagggaataaactttgaggtggaggaattggttgtagaga |
31034997 |
T |
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| Q |
594 |
tcaaagtgttatcatggtgatggatgttggaaagattaaacactccctcttgtcttttttatgaatggtgttggaatccaaggttttgccttg |
686 |
Q |
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| T |
31034996 |
ttaaggtgttgtcttggaggtagatgttggaaagaatgcacacgctgtcttgtcttttttataaatggtgttggaatccaaggttttgtcttg |
31034904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 645 - 696
Target Start/End: Complemental strand, 31034869 - 31034818
Alignment:
| Q |
645 |
gtcttttttatgaatggtgttggaatccaaggttttgccttgatagatagtg |
696 |
Q |
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| T |
31034869 |
gtcttttttatgaatggtgttggaatccaatgttttgtcttaaaagatagtg |
31034818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 10430342 - 10430381
Alignment:
| Q |
425 |
ccaaacttctttattcattgggaatgttggagtgccggag |
464 |
Q |
| |
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| T |
10430342 |
ccaaatttgtttattcattgggaatgttggagtgccggag |
10430381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 699
Target Start/End: Complemental strand, 49036528 - 49036471
Alignment:
| Q |
642 |
cttgtcttttttatgaatggtgttggaatccaaggttttgccttgatagatagtggtg |
699 |
Q |
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||||||||||||||||||||||||||||||| | | |||| |||| ||| |||||||| |
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| T |
49036528 |
cttgtcttttttatgaatggtgttggaatcctaagctttgtcttgctaggtagtggtg |
49036471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 40931846 - 40931796
Alignment:
| Q |
272 |
tgagaaatgtgctacctccggaggtgtctacgttatgtgtgatgtgcaatg |
322 |
Q |
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|||| ||||| ||||||| ||||||||||||||||||||| ||||| |||| |
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| T |
40931846 |
tgaggaatgtcctacctctggaggtgtctacgttatgtgtaatgtgtaatg |
40931796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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