View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2743_high_10 (Length: 236)
Name: NF2743_high_10
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2743_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29826472 - 29826693
Alignment:
| Q |
1 |
cgacattcacgagaaacctcgaatataaatccaccattggctttgagatcgccagcaaaaacatttgtatccttgataaggttattaaggctgccattta |
100 |
Q |
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| T |
29826472 |
cgacattcacgagaaacctcgaatataaatccaccattggctttgagatcgccagcaaaaacatttgtatccttgataaggttattaaggctgcaattta |
29826571 |
T |
|
| Q |
101 |
tactgttgatcaagaaaaataccaagcaaaaacaagtgctgtttattgtggagccagtggtgctttattagtgtacgatgttaaacgccatgttacattt |
200 |
Q |
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| T |
29826572 |
tactgttgatcaagaaaaataccaagcaaaaacaagtgctgtttattgtggagccagtggtgctttattagtgtacgatgttacacgccatgttacattt |
29826671 |
T |
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| Q |
201 |
gaaaatgtgaagaggtggctaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
29826672 |
gaaaatgtgaagaggtggctaa |
29826693 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 34701501 - 34701561
Alignment:
| Q |
162 |
gctttattagtgtacgatgttaaacgccatgttacatttgaaaatgtgaagaggtggctaa |
222 |
Q |
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| T |
34701501 |
gctttgttagtctatgatgttacccgccatgttacatttgaaaatgtggagagatggctaa |
34701561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 4373091 - 4373031
Alignment:
| Q |
158 |
tggtgctttattagtgtacgatgttaaacgccatgttacatttgaaaatgtgaagaggtgg |
218 |
Q |
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| T |
4373091 |
tggtgctttgctagtgtatgatgttacacgtcatgttacatttgaaaacgtggagaggtgg |
4373031 |
T |
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