View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2743_high_6 (Length: 284)
Name: NF2743_high_6
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2743_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 107 - 269
Target Start/End: Original strand, 53238299 - 53238462
Alignment:
| Q |
107 |
tatttattttaagagatgaagagagctcatccaatccttagacaa-atgacaagtcaaagttggaatcatgattgtaagagatttatcaattgtaataca |
205 |
Q |
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| T |
53238299 |
tatttattttaagagatgaagagagctcatccaatccttagagaacatgacaagtcaaagttgaaatcatgattgtaagagatttatcaattgtaataca |
53238398 |
T |
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| Q |
206 |
acatatataaaattatgatccaaatatgtgacacatcagtgaaagtgtgaagcctaagccattt |
269 |
Q |
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| T |
53238399 |
acatatataaaattaagatccgaatatgtgacacataagtgaaagtgtgaagcctaagccattt |
53238462 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 53237328 - 53237426
Alignment:
| Q |
19 |
atactaattcattctaatagataaagaaacaattaaaagacaaagaaa--ataacaaccaaaatgtgagtttcgagtgtcattttatctttatttattt |
115 |
Q |
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| T |
53237328 |
atactaattcattctaatagagaaagaaacaatcaaaagccaaagagagaataacaaccaaaatatgattttcgagtgtcattttatctatatttattt |
53237426 |
T |
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