View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2743_low_11 (Length: 282)

Name: NF2743_low_11
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2743_low_11
NF2743_low_11
[»] chr3 (2 HSPs)
chr3 (1-267)||(25601765-25602031)
chr3 (6-265)||(25596962-25597230)
[»] chr4 (8 HSPs)
chr4 (38-178)||(36636745-36636885)
chr4 (38-267)||(36643440-36643669)
chr4 (48-151)||(36613165-36613268)
chr4 (93-178)||(36668463-36668548)
chr4 (70-178)||(35968458-35968566)
chr4 (38-105)||(36909764-36909831)
chr4 (202-267)||(18364261-18364326)
chr4 (202-267)||(36598599-36598664)
[»] chr5 (2 HSPs)
chr5 (48-177)||(19658151-19658280)
chr5 (48-177)||(19674990-19675119)
[»] chr1 (1 HSPs)
chr1 (86-250)||(42602730-42602894)
[»] chr6 (2 HSPs)
chr6 (140-178)||(33840185-33840223)
chr6 (116-178)||(33844153-33844215)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 25602031 - 25601765
Alignment:
Q  1 attggagaatgagatcattatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcg 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25602031 attggagaatgagatcactatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcg 25601932  T
Q  101 aggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactcttt 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25601931 aggctggatgttaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagacgaatgccgcaaaactcttt 25601832  T
Q  201 atagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttg 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601831 atagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttg 25601765  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 25597230 - 25596962
Alignment:
Q  6 agaatgagatcattatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggct 105  Q
    ||||||||| || |||||||||||||| ||| |||||||||  | || |||||||||||||| |||||||| | ||| |||||||||||||||  || |     
T  25597230 agaatgagaccactatcacccctaacagagattcctaattcccgaaggtgggaattatgagaagaaacatagtctaatatctttttgaggagttcagacg 25597131  T
Q  106 ggatattaccatcacag---------tcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaact 196  Q
    |||||||||||||| ||         |||||||||||||||| || ||||| || ||||||||||||||| ||||||||||| | | |||  | |||| |    
T  25597130 ggatattaccatcatagggtgtacggtcaagatcaagagcatgcagtgaagttgtgctatcacgaagagttaaaatcttagatacggatgaggtaaaatt 25597031  T
Q  197 ctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatct 265  Q
    ||  |||||||| ||||||  | ||||||||||||||||||||||| |||||||||||| |||||||||    
T  25597030 ctccatagtggggaattcaaggcaatgcaatataagggtgggaatatgtttccaaagattcttccatct 25596962  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 36636745 - 36636885
Alignment:
Q  38 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagca 137  Q
    |||||| || ||||| |||| |||||| ||||||||||| |||||||||||||| |||||| ||||||  || ||||||| || |||||||||||||||     
T  36636745 tcctaaatcctggaggtgggtattatgggaggaaacatagtttaaaatctttttaaggagttgaggctcaatgttaccatgacggtcaagatcaagagcg 36636844  T
Q  138 ttcaatgaagctgagctatcacgaagagtcaaaatcttaga 178  Q
    | || || || |||| |||||||||||||||| || |||||    
T  36636845 tgcagtgcagttgaggtatcacgaagagtcaatatgttaga 36636885  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 267
Target Start/End: Original strand, 36643440 - 36643669
Alignment:
Q  38 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagca 137  Q
    ||||||||||||||| |||| |||||| ||| ||| ||| |||||||||||||| |||||| |||| |  |||| ||||  ||  |||||||  |||||     
T  36643440 tcctaattcgtggaggtgggtattatgggagcaaatataatttaaaatctttttaaggagttgaggttcaatatcaccacgacgatcaagattgagagct 36643539  T
Q  138 ttcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgg 237  Q
    | ||  |||| ||||||||  |||||||||||||| ||||| | ||||   |||||  |||| | ||| | ||| |  |||||||| ||||||||||| |    
T  36643540 tgcagagaagttgagctattgcgaagagtcaaaatgttagacacgaatatggcaaatttcttgacagttgaaaagtttgaggaatgtaatataagggtag 36643639  T
Q  238 gaatacgtttccaaagatacttccatcttg 267  Q
    ||||||||  |||||||| |||||||||||    
T  36643640 gaatacgtgcccaaagatgcttccatcttg 36643669  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 36613165 - 36613268
Alignment:
Q  48 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 147  Q
    ||||| |||| |||||  ||||||||||| || ||||||||||| |||| ||||||||  ||||||||   |||||||| |||||| |||| ||||| ||    
T  36613165 tggaggtgggtattatctgaggaaacataattcaaaatctttttaaggattcgaggctcaatattacctctacagtcaaaatcaagggcatccaatgcag 36613264  T
Q  148 ctga 151  Q
    ||||    
T  36613265 ctga 36613268  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 36668463 - 36668548
Alignment:
Q  93 aggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttaga 178  Q
    ||||||||||| |  | |||||||| || ||||| ||||||| |   ||||| || ||||||||||||||||||||||||||||||    
T  36668463 aggagtcgaggttcaaaattaccattacggtcaacatcaagaacgcgcaatgcagttgagctatcacgaagagtcaaaatcttaga 36668548  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 35968566 - 35968458
Alignment:
Q  70 aaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaa 169  Q
    ||||||| | ||||| |||||  |||||| ||| ||  |||||||||| || ||||| ||||||||| | || || |  |||| ||||||||||||||||    
T  35968566 aaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaa 35968467  T
Q  170 aatcttaga 178  Q
    |||||||||    
T  35968466 aatcttaga 35968458  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 36909831 - 36909764
Alignment:
Q  38 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggct 105  Q
    ||||||||| ||||| |||| |||||| || | |||||| |||||||||||||| |||||| ||||||    
T  36909831 tcctaattcatggaggtgggtattatgggaagtaacatagtttaaaatctttttaaggagttgaggct 36909764  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 18364326 - 18364261
Alignment:
Q  202 tagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttg 267  Q
    |||||| ||| || ||||||||||| ||||| || ||||| |||||||||||||  ||||||||||    
T  18364326 tagtggaaaagtctgaggaatgcaacataagagttggaatgcgtttccaaagatgtttccatcttg 18364261  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 36598599 - 36598664
Alignment:
Q  202 tagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttg 267  Q
    |||||| ||| || ||||||||||| ||||| || ||||| |||||||||||||  ||||||||||    
T  36598599 tagtggaaaagtctgaggaatgcaacataagagttggaatgcgtttccaaagatgtttccatcttg 36598664  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 19658151 - 19658280
Alignment:
Q  48 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 147  Q
    ||||| |||| |||||| ||| ||||||| | |||||||||||| |||| ||||||||  |||| ||||| || |||||||||||| || | |||||||     
T  19658151 tggaggtgggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaa 19658250  T
Q  148 ctgagctatcacgaagagtcaaaatcttag 177  Q
     |||| ||||||||||||||||||||||||    
T  19658251 ttgaggtatcacgaagagtcaaaatcttag 19658280  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 19674990 - 19675119
Alignment:
Q  48 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 147  Q
    ||||| |||| |||||| ||| ||||||| | |||||||||||| |||| ||||||||  |||| ||||| || |||||||||||| || | |||||||     
T  19674990 tggaggtgggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaa 19675089  T
Q  148 ctgagctatcacgaagagtcaaaatcttag 177  Q
     |||| ||||||||||||||||||||||||    
T  19675090 ttgaggtatcacgaagagtcaaaatcttag 19675119  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 42602730 - 42602894
Alignment:
Q  86 ctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaat 185  Q
    |||||| |||||| | ||||  ||| |||||| || || |||||||||||||| || || || |||| ||||||||||||||||||||||||| |  |||    
T  42602730 ctttttaaggagttgcggctcaatactaccatgacggtgaagatcaagagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaat 42602829  T
Q  186 gccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttcca 250  Q
       | ||||  ||| | ||||||||| |  ||||||| ||||||||| || ||||||||||||||    
T  42602830 atggaaaaatgcttcacagtgggaaagtttgaggaatccaatataagagtaggaatacgtttcca 42602894  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 33840185 - 33840223
Alignment:
Q  140 caatgaagctgagctatcacgaagagtcaaaatcttaga 178  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  33840185 caatgcagctgagttatcacgaagagtcaaaatcttaga 33840223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 33844153 - 33844215
Alignment:
Q  116 atcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttaga 178  Q
    |||||| |||| |||||||  || || || ||||||| |||||||||||||||||||||||||    
T  33844153 atcacactcaaaatcaagaatatgcagtgcagctgagttatcacgaagagtcaaaatcttaga 33844215  T

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