View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2743_low_12 (Length: 261)

Name: NF2743_low_12
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2743_low_12
NF2743_low_12
[»] chr5 (2 HSPs)
chr5 (1-261)||(39184684-39184944)
chr5 (67-257)||(8730292-8730480)
[»] chr1 (4 HSPs)
chr1 (56-257)||(42373538-42373738)
chr1 (92-253)||(17032909-17033074)
chr1 (52-234)||(19597952-19598135)
chr1 (54-122)||(41919898-41919966)
[»] chr4 (4 HSPs)
chr4 (48-165)||(16501182-16501300)
chr4 (62-253)||(46699375-46699566)
chr4 (54-122)||(30963879-30963947)
chr4 (179-234)||(12295557-12295612)
[»] chr2 (4 HSPs)
chr2 (47-173)||(31902910-31903036)
chr2 (62-253)||(22885932-22886124)
chr2 (18-173)||(39339357-39339512)
chr2 (67-257)||(25505427-25505615)
[»] chr7 (6 HSPs)
chr7 (54-214)||(37792747-37792908)
chr7 (54-116)||(38484991-38485053)
chr7 (18-173)||(47326396-47326551)
chr7 (47-116)||(3420242-3420311)
chr7 (62-165)||(12480298-12480402)
chr7 (54-122)||(38305676-38305744)
[»] chr3 (4 HSPs)
chr3 (90-253)||(25595054-25595217)
chr3 (62-227)||(5555991-5556158)
chr3 (52-173)||(17501759-17501880)
chr3 (65-163)||(1653452-1653550)
[»] chr8 (4 HSPs)
chr8 (49-201)||(9519052-9519205)
chr8 (54-116)||(34866640-34866702)
chr8 (62-141)||(10551752-10551832)
chr8 (54-122)||(34389590-34389658)
[»] chr6 (1 HSPs)
chr6 (54-165)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 39184944 - 39184684
Alignment:
Q  1 tccggcgacatacgttttctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  39184944 tccggcgacatatgttttctccatgtcaccggcagctgcatttctctgatttaggttgtgattctgcttcaaactggcgtcgttgcctatgttttgtagt 39184845  T
Q  101 tgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggta 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39184844 tgtgtttcgtcttcctatatatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcggcgtagttttggctctatcgttggcttgtgggta 39184745  T
Q  201 tattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttccttggagtctt 261  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  39184744 tattcttcgtggctgcttcttcggaatgctatggcgttgtggccgctttccttgaagtctt 39184684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 257
Target Start/End: Original strand, 8730292 - 8730480
Alignment:
Q  67 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 166  Q
    ||||| |||||||||| ||||| |||||||| |||  | ||||||||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  8730292 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 8730389  T
Q  167 gcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttccttggag 257  Q
    | |||||| || |||||||||||| | |||||||||||  | |||| ||| ||||   |||||||||||| ||| |  |||| ||||||||    
T  8730390 gtgtagttctgtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgctatggcgatgttgttgcttaccttggag 8730480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 42373538 - 42373738
Alignment:
Q  56 ttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgag 155  Q
    ||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||    
T  42373538 ttgtgattccgcttcaaaccggtgtcgttgcccgtgttttgaagttgtgtttcgtcttcctatcgatctgttctatgttactgcctgttttcttggtgag 42373637  T
Q  156 gcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttccttgg 255  Q
    | |||||| | ||||||||||| ||||||| |||| ||||||||||||||   |||||||||||||||||||||||||||| ||| || | |||||||||    
T  42373638 gtggtttgacggcgtagttttgtctctatctttgg-ttgtgggtatattcactgtggctgcttcttcggaatgctatggcgatgttgctgatttccttgg 42373736  T
Q  256 ag 257  Q
    ||    
T  42373737 ag 42373738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 253
Target Start/End: Original strand, 17032909 - 17033074
Alignment:
Q  92 ttttgtagttgtgtttcgtcttcctatagatatgtt---ttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttgg-ctctatcgt 187  Q
    |||||| ||||  |||||||||||| |||||||||    || ||||||||  ||||||||||||||| ||||||||||| |||||||| | ||||||||     
T  17032909 ttttgttgttggatttcgtcttcctctagatatgtgatattatgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctctatcgc 17033008  T
Q  188 tggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttcctt 253  Q
    ||  |||||||| |||||  ||||||||||||||||||||||||||||| |||||| |||||||||    
T  17033009 tgatttgtgggtttattcaacgtggctgcttcttcggaatgctatggcgatgtggctgctttcctt 17033074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 234
Target Start/End: Original strand, 19597952 - 19598135
Alignment:
Q  52 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 150  Q
    ||||||||| |||| ||||| || ||||||||||||| |||| ||| |||| ||||| ||||||| | | | ||| |||| ||||||| ||| |||||||    
T  19597952 taggttgtgtttccacttcagaccggcgtcgttgcccgtgttctgttgttgggtttcatcttccttttggtttgtgtttgggttgctgcctg-tttcttg 19598050  T
Q  151 gtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatgg 234  Q
    | |||| |||||||  ||||||  |||| |||| ||| ||| ||||| |||||||||| |||| || |||||| |||||||||||    
T  19598051 gcgaggtggtttggaggcgtagcctttgtctctttcgatggtttgtgagtatattctttgtggttgattcttcagaatgctatgg 19598135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 41919898 - 41919966
Alignment:
Q  54 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 122  Q
    ||||||| |||||||||||||  |||||||||||| |||||||| || |  |||| ||||||| |||||    
T  41919898 ggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagat 41919966  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 16501182 - 16501300
Alignment:
Q  48 gatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgtttt 146  Q
    ||||| |||||||||||| |||||||| ||||||| |||||||||| ||| ||||  ||| |||||||| || || ||| ||||||| || |||||||||    
T  16501182 gatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctctaaatttgtgtttgtgtggccgtctgtttt 16501281  T
Q  147 cttggtgaggcggtttggc 165  Q
    |||||||||||||||||||    
T  16501282 cttggtgaggcggtttggc 16501300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 253
Target Start/End: Complemental strand, 46699566 - 46699375
Alignment:
Q  62 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtt 161  Q
    ||||||||||||  ||||||| ||||| ||| |||| ||||   ||| ||||||||| ||| ||| ||  |||| || |||| | |||||||||| ||||    
T  46699566 ttccgcttcaaatcggcgtcgctgcccgtgtattgttgttggaattcatcttcctattgatctgtgtttggttgatgcctgtgt-cttggtgaggtggtt 46699468  T
Q  162 tggcagcgtagttt-tggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttcctt 253  Q
    |||| ||||||||| |  || ||||| ||| ||||||||| ||||  | ||||||||||||||||||| ||||| | ||| || |||||||||    
T  46699467 tggcggcgtagtttatatctttatcgctggtttgtgggtaaattcaccatggctgcttcttcggaatgttatggtgatgttgctgctttcctt 46699375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 30963879 - 30963947
Alignment:
Q  54 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 122  Q
    ||||||| |||| |||||||| ||||||| ||||| |||||||| ||||  |||||||||||| |||||    
T  30963879 ggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagat 30963947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 12295557 - 12295612
Alignment:
Q  179 ctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatgg 234  Q
    |||||| | ||| ||||||||||||||  ||||||||||||||| |||||||||||    
T  12295557 ctctattgatggtttgtgggtatattcaccgtggctgcttcttcagaatgctatgg 12295612  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 31903036 - 31902910
Alignment:
Q  47 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttt 145  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||| ||||| | | || |||||||||| || ||    
T  31903036 tgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgctgtttg-tt 31902938  T
Q  146 tcttggtgaggcggtttggcagcgtagt 173  Q
    ||||| ||||||  |||||| |||||||    
T  31902937 tcttgctgaggctatttggcggcgtagt 31902910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 253
Target Start/End: Complemental strand, 22886124 - 22885932
Alignment:
Q  62 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttt-tgtgttgctgtctgttttcttggtgaggcggt 160  Q
    |||||||||| |||||||||| |  || |||||||| |||| ||||| ||||||| | |||||||   ||||||||||  ||||| |||||||||| |||    
T  22886124 ttccgcttcagactggcgtcgctatccgtgttttgttgttgggtttcatcttcctcttgatatgtaactgtgttgctgcttgttt-cttggtgaggtggt 22886026  T
Q  161 ttggcagcgtagttt-tggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttcctt 253  Q
    ||||| |||| |||| |  |||||||  | | |||||||||||||| | ||||||||||||||| ||||||| |||| |||  | |||||||||    
T  22886025 ttggcggcgtggtttctatctctatcactagtttgtgggtatattcgttgtggctgcttcttcgaaatgctaaggcgatgttcctgctttcctt 22885932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 39339512 - 39339357
Alignment:
Q  18 tctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta 117  Q
    ||||| |||||||||| || || ||||| |||||| ||||||| || | |||||||| | ||||| ||| | |||||||| ||||  |||| |||||||     
T  39339512 tctccttgtcaccggcggccgcctttctatgattttggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctc 39339413  T
Q  118 tagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 173  Q
    ||||| | | |||||||||||||||| |||||||||||||  ||||||| |||||||    
T  39339412 tagatctatatttgtgttgctgtctg-tttcttggtgaggatgtttggcggcgtagt 39339357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 257
Target Start/End: Complemental strand, 25505615 - 25505427
Alignment:
Q  67 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 166  Q
    ||||| |||||||||| ||||| |||||||| |||  | ||||||||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  25505615 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 25505518  T
Q  167 gcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttccttggag 257  Q
    | |||||| || |||||||||||| | |||||||||||  | |||| ||| ||||   |||||||||||| ||| |  |||| ||||||||    
T  25505517 gtgtagttctgtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgctatggcgatgttgttgcttaccttggag 25505427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 214
Target Start/End: Original strand, 37792747 - 37792908
Alignment:
Q  54 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttggt 152  Q
    ||||||| ||||||||||||| |||||||||| || |||||||  |||| ||||| |||| || | |||  || |||||||||||||||| |||||||||    
T  37792747 ggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttgctgttgggtttcatctttctcttgatccgtgtttgtgttgctgtctg-tttcttggt 37792845  T
Q  153 gaggcggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatattcttcgtggct 214  Q
      |  |||||||| ||||||||| || |||| ||||||| |||||||| ||||| ||||||||    
T  37792846 tggctggtttggcggcgtagtttctgtctctgtcgttggtttgtgggtttattcatcgtggct 37792908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 38484991 - 38485053
Alignment:
Q  54 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 116  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||| ||   |||||||||||||    
T  38484991 ggttgtgtttccgcttcaaaccggcgtcgctgcccatgttttgttgtcaggtttcgtcttcct 38485053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 47326551 - 47326396
Alignment:
Q  18 tctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta 117  Q
    ||||| |||||||||| || || ||||| |||||| ||||||| || | |||||||  || |||| ||||| |||||||| ||||  |||| |||||||     
T  47326551 tctccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttcctcttcctc 47326452  T
Q  118 tagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 173  Q
    |||||   | ||||||||||||  ||||| ||||||||||  ||||||| |||||||    
T  47326451 tagatcaatatttgtgttgctgcttgttt-cttggtgaggatgtttggcggcgtagt 47326396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 3420311 - 3420242
Alignment:
Q  47 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 116  Q
    |||| ||||||||| ||||||||| ||| ||||||| ||| | |||||||| |||  |||||||||||||    
T  3420311 tgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgttttgttgtttggtttcgtcttcct 3420242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 12480298 - 12480402
Alignment:
Q  62 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttc-gtcttcctatagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 159  Q
    |||| |||||||| ||||||| ||| | |||||||| ||||  |||| |||||||| | ||| ||| ||||||| ||  |||||||||||||||||||||    
T  12480298 ttccacttcaaaccggcgtcgctgctcgtgttttgttgttggttttcagtcttcctct-gatctgtatttgtgtggccatctgttttcttggtgaggcgg 12480396  T
Q  160 tttggc 165  Q
    ||||||    
T  12480397 tttggc 12480402  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 38305676 - 38305744
Alignment:
Q  54 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 122  Q
    ||||||| ||||||||||||| ||||| | ||||  |||||||| ||||  |||||||||||| |||||    
T  38305676 ggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagat 38305744  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 25595217 - 25595054
Alignment:
Q  90 tgttttgtagttgtgtttcgtcttcctatagatatgtttt-gtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgtt 188  Q
    |||||||| ||| ||||||||| |||| ||||| |||||| |||||||||  ||||| |||||||||||||||||||| |||||||| | |||||||| |    
T  25595217 tgttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtagtttcgtctctatcgct 25595119  T
Q  189 ggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttcctt 253  Q
     | || ||||||| ||   ||||||||| | || |||| || |||||| ||| || |||||||||    
T  25595118 cgtttatgggtattttaaccgtggctgcatttttggaaggcaatggcgatgttgctgctttcctt 25595054  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 227
Target Start/End: Original strand, 5555991 - 5556158
Alignment:
Q  62 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta-tagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 159  Q
    |||||||||| || ||||||| ||||| |||| | | |||| | |||||||||  | ||||||||| ||||||||||||  ||||||| ||||| |||||    
T  5555991 ttccgcttcagaccggcgtcgctgcccgtgttcttttgttgggcttcgtcttcaaaatagatatgtgtttgtgttgctgcttgttttcatggtgtggcgg 5556090  T
Q  160 tttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaat 227  Q
    || ||| || | |||||| |||| ||| ||| ||||||||||||||    ||| ||||||||||||||    
T  5556091 ttaggctgcattgttttgtctctgtcgctggtttgtgggtatattcactatggttgcttcttcggaat 5556158  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 17501880 - 17501759
Alignment:
Q  52 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 150  Q
    ||||||||| ||||||||||||||| |||| ||| || |||||||| |||   |||||||||||| ||||| | | |||||||||||  || |||| |||    
T  17501880 taggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagatctatatttgtgttgcttcctatttt-ttg 17501782  T
Q  151 gtgaggcggtttggcagcgtagt 173  Q
    ||||||  |||||||||||||||    
T  17501781 gtgaggatgtttggcagcgtagt 17501759  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 1653550 - 1653452
Alignment:
Q  65 cgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct--atagatatgttttgtgttgctgtctgttttcttggtgaggcggttt 162  Q
    |||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||  |||  |||| |||||||||||| ||| |||||| |||||| |||||    
T  1653550 cgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcctccatatttatg-tttgtgttgctgcctg-tttcttcgtgaggaggttt 1653453  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 201
Target Start/End: Original strand, 9519052 - 9519205
Alignment:
Q  49 atttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttc 147  Q
    |||| ||||||| | |||||||||||  |||||| ||||| |||||||| |||| |||||||||| || ||||| ||| ||||| ||||||| |||||||    
T  9519052 atttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctttctctagatttgtgtttgtattgctgt-tgttttc 9519150  T
Q  148 ttggtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtat 201  Q
     |||||||| || ||||| | |||| ||||| | |||||| ||| ||||||||||    
T  9519151 atggtgaggtgggttggcggtgtagtttttgtccctatcgctggtttgtgggtat 9519205  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 34866702 - 34866640
Alignment:
Q  54 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 116  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||    
T  34866702 ggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcct 34866640  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 10551752 - 10551832
Alignment:
Q  62 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtct 141  Q
    ||||||||||||  ||||||| ||||| || ||||| |||| ||||||||||||| ||||| | | |||||||||||||||    
T  10551752 ttccgcttcaaatcggcgtcgctgcccgtgctttgttgttgggtttcgtcttcctctagatctatgtttgtgttgctgtct 10551832  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 34389658 - 34389590
Alignment:
Q  54 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 122  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| || |  ||||||| |||| |||||    
T  34389658 ggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagat 34389590  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 12793553 - 12793664
Alignment:
Q  54 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatat-gttttgtgttgctgtctgttttcttggt 152  Q
    ||||||| || |||||||||||||||||||||||| |||||||  | ||  |||||||||||| | ||| |   |||||||||||||||| |||||||||    
T  12793553 ggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttggtgatggatttcgtcttcctctggatctaaatttgtgttgctgtctg-tttcttggt 12793651  T
Q  153 gaggcggtttggc 165  Q
    ||||  |||||||    
T  12793652 gagggtgtttggc 12793664  T

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