View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2743_low_13 (Length: 260)
Name: NF2743_low_13
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2743_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 16791136 - 16790982
Alignment:
| Q |
100 |
actgacctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattaca---attattgatgcattttcatgagcaagatagtgacttgcaat |
196 |
Q |
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| T |
16791136 |
actgacctttattgttcttgaaggtgaagtcttgccactaaagtatttaaattacatttattattgatgcattttcatgagcaagatagtgacttgcaat |
16791037 |
T |
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| Q |
197 |
tatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgc |
251 |
Q |
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| T |
16791036 |
tatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgc |
16790982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 103 - 257
Target Start/End: Complemental strand, 16793045 - 16792888
Alignment:
| Q |
103 |
gacctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattacaat---tattgatgcattttcatgagcaagatagtgacttgcaattat |
199 |
Q |
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| T |
16793045 |
gacctttattgttctcgaaggcgaagtcttgccactaaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattat |
16792946 |
T |
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| Q |
200 |
ttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgctactcc |
257 |
Q |
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| T |
16792945 |
ttgttcccacaggatggaaaaagcctcgcagcttttttgcaaccacttttggtactcc |
16792888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 16791271 - 16791184
Alignment:
| Q |
14 |
gattgatcattctgacattttgcttggatcgatgagttgggaccaaaggaaaggaaaatcatcataaaaacatgaagttgccatagac |
101 |
Q |
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| T |
16791271 |
gattgatcattctgacattttgcttggatcgatgagttgggaccaaaggaaaggaaaatcatcataaaaacaagaagttgccatagac |
16791184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 16617353 - 16617253
Alignment:
| Q |
158 |
tattgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgctactcc |
257 |
Q |
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| T |
16617353 |
tattgatgtattttcatcagcaagattatgacttgcaatgatttgttcccacaggatggaaaatgcctcgcagctttgttgcaaccacctttgatactcc |
16617254 |
T |
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| Q |
258 |
t |
258 |
Q |
| |
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| |
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| T |
16617253 |
t |
16617253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 258
Target Start/End: Complemental strand, 16629734 - 16629577
Alignment:
| Q |
104 |
acctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattacaatt---attgatgcattttcatgagcaagatagtgacttgcaattatt |
200 |
Q |
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||||||||| || |||||||| ||||| ||||||||||| ||| || || | || |||||||||||||||| ||| |||| ||||||||||| ||| |
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| T |
16629734 |
acctttattagtcccgaaggtggagtctcgccactaaagtgtttgaactaaatttgatattgatgcattttcatcagctagattatgacttgcaatgatt |
16629635 |
T |
|
| Q |
201 |
tgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgctactcct |
258 |
Q |
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|||| ||||||||| |||||||| || | ||||| | |||||||||||| ||||||| |
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| T |
16629634 |
tgttcccacaggatggaaaatgcgtcccgtctttgatccaaccacctttgatactcct |
16629577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 258
Target Start/End: Complemental strand, 16638615 - 16638458
Alignment:
| Q |
104 |
acctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattacaatt---attgatgcattttcatgagcaagatagtgacttgcaattatt |
200 |
Q |
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| T |
16638615 |
acctttattagtcccgaaggtggagtctcgccactaaagtgtttgaactaaatttgatattgatgcattttcatcagctagattatgacttgcaatgatt |
16638516 |
T |
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| Q |
201 |
tgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgctactcct |
258 |
Q |
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| T |
16638515 |
tgttcccacaggatggaaaatgcgtcccgtctttgatccaaccacctttgatactcct |
16638458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 16629369 - 16629269
Alignment:
| Q |
158 |
tattgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgctactcc |
257 |
Q |
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| T |
16629369 |
tattgatgcattttcctctgcaagattatgacttgcaatgatttgttcccacaggatggaatatgcgtcgcgtctttgatccaaccgcctttggtactcc |
16629270 |
T |
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| Q |
258 |
t |
258 |
Q |
| |
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| |
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| T |
16629269 |
t |
16629269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 16638250 - 16638150
Alignment:
| Q |
158 |
tattgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgctactcc |
257 |
Q |
| |
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||||||||||||||| | ||||||| ||||||||||| ||||||| ||||||||| ||| |||| |||| ||||| | ||||| |||||| |||||| |
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| T |
16638250 |
tattgatgcattttcctctgcaagattatgacttgcaatgatttgttcccacaggatggaatatgcgtcgcgtctttgatccaaccgcctttggtactcc |
16638151 |
T |
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| Q |
258 |
t |
258 |
Q |
| |
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| T |
16638150 |
t |
16638150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 15110408 - 15110451
Alignment:
| Q |
206 |
ccacaggatagaaaatgcctcgcagctttgttgcaaccaccttt |
249 |
Q |
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| T |
15110408 |
ccacaggatggaaaatgcatcgcagctttgttgcaaccaccttt |
15110451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 38877856 - 38877741
Alignment:
| Q |
135 |
cactaaagtatttaaattacaatt---attgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagc |
231 |
Q |
| |
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||||||||| ||||| ||||| || |||||||||| ||||| |||||||| ||||||| ||| |||| | |||||| || ||||||||||| |||| |
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| T |
38877856 |
cactaaagtgtttaatttacatttgacattgatgcatgttcatcagcaagattctgacttgtaatgatttactcccacagcatggaaaatgcctcacagc |
38877757 |
T |
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| Q |
232 |
tttgttgcaaccacct |
247 |
Q |
| |
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|||||||||||||||| |
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| T |
38877756 |
tttgttgcaaccacct |
38877741 |
T |
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