View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2743_low_14 (Length: 253)
Name: NF2743_low_14
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2743_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 21454880 - 21454695
Alignment:
| Q |
19 |
cataggatacaatgactaccatctaaaattgatttacaccaatgttatgtttggataagtgttatctgggtcaataccatgtcccaatacatcttaaccg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21454880 |
cataggatacaatgactaccatctaaaattgatttacaccaatgttatgtttggataagtggtatctgggtcaataccatgtcccaatacatcttaaccg |
21454781 |
T |
|
| Q |
119 |
cttaatgattaaagctactatatacaacttcggcgttgctgttattttaaatgtgagtttgggtaaaagtgacggaaatcaaaaca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21454780 |
cttaatgattaaagctactatatacaacatcggcgttgctgttattttaaatgtgagtttgggtaaaagtgacggaaatcaaaaca |
21454695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University