View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2743_low_15 (Length: 238)
Name: NF2743_low_15
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2743_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 13907799 - 13908010
Alignment:
| Q |
8 |
aaacaattgaaacctttcctttctagggtctttctctcctctcacaatctttccaacctctatgtggaaacaaacacacccttagcgtataagttagtgt |
107 |
Q |
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| T |
13907799 |
aaacaatggaaacctttcctttccggtgtctttctctcatcccacaatctttccaacctctatgtggaaacaaacacacccttagcgtataagtta--gt |
13907896 |
T |
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| Q |
108 |
ataacttacaaaacttattttgtattatttattactaatatttagaagaag-aaaaaatatattggtcatttcactctcaaaatatgcatatgtgtatgt |
206 |
Q |
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| T |
13907897 |
ataacttaccaaacttattttgtattatttattactaacatttagaagaagaaaaaaatatattggtcatttcactctcaaaatatgcatatgtgtatgt |
13907996 |
T |
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| Q |
207 |
tatatatgtgaaca |
220 |
Q |
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| T |
13907997 |
tatatatgtgaaca |
13908010 |
T |
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Back To:
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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 38481168 - 38481254
Alignment:
| Q |
1 |
ttgctctaaacaattgaaacctttcctttctagggtctttctctcctctcacaatctttccaacctcta--tgtggaaacaaacaca |
85 |
Q |
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| T |
38481168 |
ttgctccaaacaatggaaacctttcctttccattgtctttctctcctctcacaatctttccaacctctatctgtggaaactaacaca |
38481254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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