View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2743_low_2 (Length: 452)
Name: NF2743_low_2
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2743_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 21 - 381
Target Start/End: Original strand, 21839592 - 21839956
Alignment:
| Q |
21 |
atggatccactgaatgaactcctagccaattacgaacaagttgccaaattattccnnnnnnngtacaatac--aaagttaaatgattctaacactccgca |
118 |
Q |
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| T |
21839592 |
atggatccactgaatgaactcctagccaattacgaacaagttgccaaattgttccaaaaaaagtacaatttttaaagttaaatgattctaacactccgta |
21839691 |
T |
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| Q |
119 |
accaccaacacacaattgggactcctgagatataattcatt--ccatgagatttaaaaactccataaaactaatgattttataattttggatcctaatgc |
216 |
Q |
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| T |
21839692 |
accaccaacacacaactgggactcctgagatataattcattttccatgagatttaaaaactccataaaactaatgattttataattttggatcctaatat |
21839791 |
T |
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| Q |
217 |
tgttttatatatttgaacccatgacactagttttaaattttatgattctaatatttatttacaannnnnnnaaaggaattaattatgtacttttataatc |
316 |
Q |
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| T |
21839792 |
tgttttatatatttgaacccataacactagttttaaattttatgattctaatatttatttacaatttttttaaaggaattaattatgtacttttataatc |
21839891 |
T |
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| Q |
317 |
tatatatgccaaaaatattgattagaagttaataccccgtcccaaatatacaagactctcttgag |
381 |
Q |
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| T |
21839892 |
tatatatgccaaaaatattgattagaagttaataccccgtcccaaatatacaagactctcttgag |
21839956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 3743766 - 3743718
Alignment:
| Q |
21 |
atggatccactgaatgaactcctagccaattacgaacaagttgccaaat |
69 |
Q |
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| T |
3743766 |
atggatccactgaatgaactccaagccaagtcctaacaagctgccaaat |
3743718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 29546439 - 29546392
Alignment:
| Q |
23 |
ggatccactgaatgaactcctagccaattacgaacaagttgccaaatt |
70 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
29546439 |
ggatccgctgaatgaactcctagccaatttcgaacaagttgccaaatt |
29546392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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