View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2743_low_20 (Length: 215)
Name: NF2743_low_20
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2743_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 38083129 - 38082943
Alignment:
| Q |
20 |
tgaagaagaccttgttggcatgtaatatgtaactatctctctaaaaatgctctttgagccttgaagcctttaccccttagctctagaccccactccccta |
119 |
Q |
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| T |
38083129 |
tgaagaagaccttgttggcatgtaatatgtaattatctctctaaaaatgctctttgagccttgaagcctttaccccttagctctagaccccactccccta |
38083030 |
T |
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| Q |
120 |
aacctttatttataaagaaaagatacacatataatagagaaataacaaaacagcttattttttattatcgtgacctttgctactcca |
206 |
Q |
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| T |
38083029 |
aacctttatttataaagaaaagatacacatataaaagagaaataacaaaacagcttattttttattatcgtgaccttagctactcca |
38082943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 38087445 - 38087404
Alignment:
| Q |
133 |
aaagaaaagatacacatataatagagaaataacaaaacagct |
174 |
Q |
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| T |
38087445 |
aaagaaaagatacacatataaaagataaataacaaagcagct |
38087404 |
T |
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