View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2743_low_4 (Length: 355)

Name: NF2743_low_4
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2743_low_4
NF2743_low_4
[»] chr4 (25 HSPs)
chr4 (19-328)||(48852411-48852720)
chr4 (185-287)||(48891326-48891428)
chr4 (138-230)||(48898586-48898678)
chr4 (125-230)||(37827110-37827215)
chr4 (138-230)||(49044312-49044404)
chr4 (181-236)||(48170690-48170745)
chr4 (128-223)||(48863086-48863181)
chr4 (138-229)||(50250907-50250998)
chr4 (181-226)||(48870452-48870497)
chr4 (181-230)||(48875756-48875805)
chr4 (181-226)||(48886138-48886183)
chr4 (139-221)||(7822840-7822922)
chr4 (182-236)||(33133924-33133978)
chr4 (181-227)||(48705478-48705524)
chr4 (265-305)||(49048623-49048663)
chr4 (179-230)||(49048700-49048751)
chr4 (185-224)||(50672412-50672451)
chr4 (139-221)||(7800508-7800590)
chr4 (139-221)||(7813351-7813433)
chr4 (185-239)||(48156525-48156579)
chr4 (271-309)||(49041210-49041248)
chr4 (180-230)||(49041271-49041321)
chr4 (266-328)||(50669047-50669109)
chr4 (266-323)||(49044219-49044276)
chr4 (142-230)||(50668923-50669011)
[»] chr6 (3 HSPs)
chr6 (138-305)||(21015673-21015840)
chr6 (128-239)||(21979757-21979868)
chr6 (267-309)||(14197710-14197752)
[»] chr5 (4 HSPs)
chr5 (181-238)||(42562439-42562496)
chr5 (184-222)||(29261163-29261201)
chr5 (179-221)||(29688019-29688061)
chr5 (271-328)||(29696203-29696260)
[»] chr7 (2 HSPs)
chr7 (185-328)||(48883712-48883855)
chr7 (184-222)||(30120435-30120473)
[»] chr3 (3 HSPs)
chr3 (138-230)||(47452023-47452115)
chr3 (138-224)||(11015641-11015727)
chr3 (244-309)||(11024574-11024639)
[»] chr1 (1 HSPs)
chr1 (138-223)||(24310050-24310135)
[»] chr8 (3 HSPs)
chr8 (266-324)||(12200299-12200357)
chr8 (266-324)||(12444727-12444785)
chr8 (151-296)||(4031960-4032105)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 48852411 - 48852720
Alignment:
Q  19 tcaacttcagaacttcaaactcgatctatagatctcgaagcatcgcttaacgttgaggccgcttcactgaaccaccttacttttatgccccaatcttatc 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48852411 tcaacttcagaacttcaaactctatctatagatctcgaagcatcgcttaacgttgaggccacttcactgaaccaccttacttttatgccccaatcttatc 48852510  T
Q  119 tttacattcatattaatgcttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  48852511 tttacattcatattaatgcttcatgtagaggctttatatttttgcaccgttcttcagagatttatctatggaatccatccaccggagttcacaaacaaat 48852610  T
Q  219 acctttgtctcccattgattcgaggttagatggcacatatttctgttatctatatggttttgggtatgacccgtcaaccgatgattacttgttagtttta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48852611 acctttgtctcccattgattcgaggttagatggcacatatttctgttatctatatggttttgggtatgacccgtcaaccgatgattacttggtagtttta 48852710  T
Q  319 atgtcctatg 328  Q
    ||||||||||    
T  48852711 atgtcctatg 48852720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 48891326 - 48891428
Alignment:
Q  185 tatggaatccatctaccggagttcacaaacaaatacctttgtctcccattgattcgaggttagatggcacatatttctgttatctatatggttttgggta 284  Q
    ||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||| ||  ||||| |||||||||||||||||| ||||    
T  48891326 tatggaatccatccactggacttcacaaacaaatacctttgtctcctattgattcgaggttagatgccaactatttatgttatctatatggttttaggta 48891425  T
Q  285 tga 287  Q
    |||    
T  48891426 tga 48891428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 48898586 - 48898678
Alignment:
Q  138 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 230  Q
    ||||||||||||||||||| |||| ||   ||  ||||| ||  |||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  48898586 ttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttgtctcc 48898678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 37827215 - 37827110
Alignment:
Q  125 ttcatattaatgcttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaataccttt 224  Q
    |||| ||||| | |||| ||||||| ||| ||||||| |||||||||| | | || ||| ||||||||||||| || ||| |||||||||||||||| ||    
T  37827215 ttcaaattaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcacaaacaaataccctt 37827116  T
Q  225 gtctcc 230  Q
    ||||||    
T  37827115 gtctcc 37827110  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 49044404 - 49044312
Alignment:
Q  138 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 230  Q
    |||||||||||| ||||||||||| || ||| || ||   | ||| |||||||||||||| ||  ||||||||||||||||||||||||||||    
T  49044404 ttcatgtagagggtttatatttttgcatcgtgctgcaacaacttatctatggaatccatccactagagttcacaaacaaatacctttgtctcc 49044312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 48170745 - 48170690
Alignment:
Q  181 tacctatggaatccatctaccggagttcacaaacaaatacctttgtctcccattga 236  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||    
T  48170745 tacctatggaatccatccacccgagttcataaacaaatacctttgtctcctattga 48170690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 48863086 - 48863181
Alignment:
Q  128 atattaatgcttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctt 223  Q
    ||||||| ||||||| ||||||||||||  ||||  || || ||||| | || ||||||||||||||||| ||||||| ||| |||||||||||||    
T  48863086 atattaaagcttcatctagaggctttattgttttcaactgtgcttcaaacatctacctatggaatccatccaccggagctcagaaacaaatacctt 48863181  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 50250998 - 50250907
Alignment:
Q  138 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctc 229  Q
    |||||||||||| ||||||||||| ||| ||| ||||    | ||||||||||||||||| |||||  |||||| |||||||||||||||||    
T  50250998 ttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctttgtctc 50250907  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 48870452 - 48870497
Alignment:
Q  181 tacctatggaatccatctaccggagttcacaaacaaatacctttgt 226  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||    
T  48870452 tacctatggaatccatccaccggatttcacaaacaaatacctttgt 48870497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 48875756 - 48875805
Alignment:
Q  181 tacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 230  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  48875756 tacctatggaatccatccaccggatttcacaaacaaatacctatgtctcc 48875805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 48886138 - 48886183
Alignment:
Q  181 tacctatggaatccatctaccggagttcacaaacaaatacctttgt 226  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||    
T  48886138 tacctatggaatccatccaccggatttcacaaacaaatacctttgt 48886183  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 7822840 - 7822922
Alignment:
Q  139 tcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacc 221  Q
    |||||| |||| ||| |||||||  |||||| | |||| ||||||||||||||||||||||| ||| || | |||||||||||    
T  7822840 tcatgtggagggtttttatttttataccgttttccagacatttacctatggaatccatctactggatttaagaaacaaatacc 7822922  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 33133978 - 33133924
Alignment:
Q  182 acctatggaatccatctaccggagttcacaaacaaatacctttgtctcccattga 236  Q
    |||||||||||||||  ||| ||||||| |||||||||||||||||||| |||||    
T  33133978 acctatggaatccattcacccgagttcataaacaaatacctttgtctccaattga 33133924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 48705524 - 48705478
Alignment:
Q  181 tacctatggaatccatctaccggagttcacaaacaaatacctttgtc 227  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  48705524 tacctgtggaatccatctactggatttcacaaacaaatacctttgtc 48705478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 49048663 - 49048623
Alignment:
Q  265 tatctatatggttttgggtatgacccgtcaaccgatgatta 305  Q
    |||||||||||||||||||||||||| ||||| ||||||||    
T  49048663 tatctatatggttttgggtatgacccatcaacagatgatta 49048623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 49048751 - 49048700
Alignment:
Q  179 tttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 230  Q
    ||||||| ||||||||||| ||  ||||||||| ||||||||||||||||||    
T  49048751 tttacctttggaatccatccactagagttcacagacaaatacctttgtctcc 49048700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 50672412 - 50672451
Alignment:
Q  185 tatggaatccatctaccggagttcacaaacaaataccttt 224  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaataccttt 50672451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 7800508 - 7800590
Alignment:
Q  139 tcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacc 221  Q
    |||||| |||| ||| |||||||  |||||| | |||| |||||||| |||||||||||||| ||| || | |||||||||||    
T  7800508 tcatgtggagggtttttatttttataccgttttccagacatttacctgtggaatccatctactggatttaagaaacaaatacc 7800590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 7813351 - 7813433
Alignment:
Q  139 tcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacc 221  Q
    |||||| |||| ||| |||||||  |||||| | |||| |||||||| |||||||||||||| ||| || | |||||||||||    
T  7813351 tcatgtggagggtttttatttttataccgttttccagacatttacctgtggaatccatctactggatttaagaaacaaatacc 7813433  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 48156579 - 48156525
Alignment:
Q  185 tatggaatccatctaccggagttcacaaacaaatacctttgtctcccattgattc 239  Q
    ||||||||||||| ||  ||||| |||||||||||||||||||||| | ||||||    
T  48156579 tatggaatccatcaactagagtttacaaacaaatacctttgtctcctaatgattc 48156525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 49041248 - 49041210
Alignment:
Q  271 tatggttttgggtatgacccgtcaaccgatgattacttg 309  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  49041248 tatggttttgggtatgatccgtcaacagatgattacttg 49041210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 49041321 - 49041271
Alignment:
Q  180 ttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 230  Q
    |||||||||||| ||||| ||||||| |||||||| |||||||||| ||||    
T  49041321 ttacctatggaacccatccaccggagctcacaaactaatacctttgcctcc 49041271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 50669047 - 50669109
Alignment:
Q  266 atctatatggttttgggtatgacccgtcaaccgatgattacttgttagttttaatgtcctatg 328  Q
    |||||||||||||||| ||||||| |||||  |||||||||||| | |||| | |||||||||    
T  50669047 atctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatg 50669109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 49044276 - 49044219
Alignment:
Q  266 atctatatggttttgggtatgacccgtcaaccgatgattacttgttagttttaatgtc 323  Q
    |||||||| ||||||||||||| |||||||| |||||||| ||| | ||||| |||||    
T  49044276 atctatattgttttgggtatgatccgtcaacagatgattatttggtggttttgatgtc 49044219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 50668923 - 50669011
Alignment:
Q  142 tgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 230  Q
    |||||||||||||||||||| ||  |||||||  | || | | ||||||||||||| ||| || |||| ||||| ||||| ||||||||    
T  50668923 tgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacagataccattgtctcc 50669011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 305
Target Start/End: Original strand, 21015673 - 21015840
Alignment:
Q  138 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcccattgat 237  Q
    |||||||||||| ||||||||||| |||| |  |||| | || ||||||||||||||||| ||  |||||||||||||||||||||||||||| | |  |    
T  21015673 ttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaatagt 21015772  T
Q  238 tcgaggttagatggcacatatttctgttatctatatggttttgggtatgacccgtcaaccgatgatta 305  Q
    ||    |||| || ||  ||| | ||||||||||||||||||||||||||||| ||||| ||||||||    
T  21015773 tcatatttaggtgtcaattatatatgttatctatatggttttgggtatgacccatcaacagatgatta 21015840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 21979868 - 21979757
Alignment:
Q  128 atattaatgcttcatgtagaggctttatattttttcaccgttcttcagagatt-tacctatggaatccatctaccggagttcacaaacaaatacctttgt 226  Q
    ||||||| | |||||||||||| ||||||||||| ||| ||| |||| ||| | ||| ||||||| || ||||| ||| |||| ||||||||||||||||    
T  21979868 atattaaaggttcatgtagaggatttatatttttccactgtttttca-agactctacatatggaacccgtctactggacttcaaaaacaaatacctttgt 21979770  T
Q  227 ctcccattgattc 239  Q
    ||||  |||||||    
T  21979769 ctcctcttgattc 21979757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 14197752 - 14197710
Alignment:
Q  267 tctatatggttttgggtatgacccgtcaaccgatgattacttg 309  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||    
T  14197752 tctatatggctttgggtatgacctgtcaaccaatgattacttg 14197710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 42562496 - 42562439
Alignment:
Q  181 tacctatggaatccatctaccggagttcacaaacaaatacctttgtctcccattgatt 238  Q
    ||||||||||||||||| | ||||  |||||||||||||||||||||||| |||||||    
T  42562496 tacctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgatt 42562439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 29261163 - 29261201
Alignment:
Q  184 ctatggaatccatctaccggagttcacaaacaaatacct 222  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  29261163 ctatggaatccatcaaccggagtccacaaacaaatacct 29261201  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 29688019 - 29688061
Alignment:
Q  179 tttacctatggaatccatctaccggagttcacaaacaaatacc 221  Q
    |||| |||||||||||||| ||||||||||||| |||||||||    
T  29688019 tttatctatggaatccatccaccggagttcacagacaaatacc 29688061  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 29696203 - 29696260
Alignment:
Q  271 tatggttttgggtatgacccgtcaaccgatgattacttgttagttttaatgtcctatg 328  Q
    ||||||||||||||||||  |||||| |||||||||||| |  ||| |||||||||||    
T  29696203 tatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatg 29696260  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 328
Target Start/End: Original strand, 48883712 - 48883855
Alignment:
Q  185 tatggaatccatctaccggagttcacaaacaaatacctttgtctcccattgattcgaggttagatggcacat-atttctgttatctatatggttttgggt 283  Q
    ||||||||||||  || ||| |||||||||||||||||||||||||  || |||| |  | ||| |  |||| |||||  | |||||||||||||||| |    
T  48883712 tatggaatccatacactggatttcacaaacaaatacctttgtctcctttttattccatttcagaagt-acattatttcgatcatctatatggttttggtt 48883810  T
Q  284 atgacccgtcaaccgatgattacttgttagttttaatgtcctatg 328  Q
    ||||||||||||  ||||||||| || | |||| |||||||||||    
T  48883811 atgacccgtcaagagatgattacatggtggtttcaatgtcctatg 48883855  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 30120473 - 30120435
Alignment:
Q  184 ctatggaatccatctaccggagttcacaaacaaatacct 222  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  30120473 ctatggaatccatccaccggagtccacaaacaaatacct 30120435  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 47452115 - 47452023
Alignment:
Q  138 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 230  Q
    |||||||||||| |||||| ||||     |||||||| | || ||| ||||||||||||| || |||||||||||||||||||||||| ||||    
T  47452115 ttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacctttgcctcc 47452023  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 11015727 - 11015641
Alignment:
Q  138 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaataccttt 224  Q
    |||||||||||| |||||| ||||     |||||||| | || ||||||||||||||||| || |||  ||||||||||||||||||    
T  11015727 ttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaatccatcaactggacatcacaaacaaataccttt 11015641  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 11024639 - 11024574
Alignment:
Q  244 ttagatggcacatatttctgttatctatatggttttgggtatgacccgtcaaccgatgattacttg 309  Q
    ||||||| || |||||  |||| |||||||||||||||||||||||  ||||  ||||||||||||    
T  11024639 ttagatgccaaatattcatgttgtctatatggttttgggtatgaccattcaagagatgattacttg 11024574  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 24310050 - 24310135
Alignment:
Q  138 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctt 223  Q
    |||||||||||| |||||||| ||  |  ||| |||| | |||||| ||||||||||||| ||||||||||| | |||||||||||    
T  24310050 ttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacctt 24310135  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 12200299 - 12200357
Alignment:
Q  266 atctatatggttttgggtatgacccgtcaaccgatgattacttgttagttttaatgtcc 324  Q
    |||||||||||||||| ||||||| |||||  |||||||||||| | |||||| |||||    
T  12200299 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12200357  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 12444727 - 12444785
Alignment:
Q  266 atctatatggttttgggtatgacccgtcaaccgatgattacttgttagttttaatgtcc 324  Q
    |||||||||||||||| ||||||| |||||  |||||||||||| | |||||| |||||    
T  12444727 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12444785  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 296
Target Start/End: Complemental strand, 4032105 - 4031960
Alignment:
Q  151 tttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcccattgattcgaggttagatg 250  Q
    ||||||||| | ||| |||||||||| ||    ||||||||| |||| |  ||||||||||||||||||||||| ||||| ||| |||| |   |||| |    
T  4032105 tttatatttatgcacagttcttcagacatacttctatggaattcatccattggagttcacaaacaaatacctttatctcctattaattccaatctagacg 4032006  T
Q  251 gcacatatttctgttatctatatggttttgggtatgacccgtcaac 296  Q
         | |||| ||||| ||||||||||||||||||||| ||||||    
T  4032005 atggttgtttcggttatttatatggttttgggtatgaccagtcaac 4031960  T

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