View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2743_low_5 (Length: 354)

Name: NF2743_low_5
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2743_low_5
NF2743_low_5
[»] chr7 (8 HSPs)
chr7 (59-335)||(1252695-1252971)
chr7 (141-335)||(21101696-21101890)
chr7 (99-231)||(21227828-21227959)
chr7 (80-200)||(8157882-8158001)
chr7 (215-286)||(10480234-10480306)
chr7 (89-160)||(19398429-19398500)
chr7 (128-166)||(18495903-18495941)
chr7 (80-160)||(1731481-1731561)
[»] chr6 (1 HSPs)
chr6 (107-283)||(22537825-22537998)
[»] chr8 (3 HSPs)
chr8 (89-166)||(26614809-26614886)
chr8 (241-303)||(26614738-26614800)
chr8 (188-225)||(27659929-27659966)
[»] chr3 (1 HSPs)
chr3 (142-270)||(26335738-26335866)
[»] chr2 (2 HSPs)
chr2 (131-166)||(27418757-27418792)
chr2 (131-166)||(27419903-27419938)
[»] chr1 (2 HSPs)
chr1 (128-178)||(34103913-34103963)
chr1 (189-237)||(17017267-17017315)
[»] chr5 (2 HSPs)
chr5 (80-160)||(23014167-23014247)
chr5 (128-160)||(23031596-23031628)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 59 - 335
Target Start/End: Original strand, 1252695 - 1252971
Alignment:
Q  59 gtattaggtggggttataccttctcaaagataattgaaacatagatttaaattagagttcttaagtttatcataaatgttctctcatctatgaatcttag 158  Q
    |||||||||||||| || | ||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| |||||||||||| |||||||||    
T  1252695 gtattaggtggggtcatgctttctcaaagataattgaaacatagacttaaattagagtttttaaatttatcataaatattctctcatctacgaatcttag 1252794  T
Q  159 aaatacattagcatactcttttgtcttgatagttctacaaacggtcaactctatcttatctaccttatcaaggttgaaagagtaaaattattatgcaacg 258  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||     
T  1252795 aaatacattagtatactcttttgtcttgatagttctacaaacggtcaactatatcttgtctaccttatcaaggatgaaagagtaaaattattatgcaaca 1252894  T
Q  259 ttcagattaggatttcggcctaattttgagctcattcaccatttttataacaattttcctaattcgagcggttatcc 335  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  1252895 ttcagattaggattttggcctaattctgagctcattcaccatttttataacaattttcctaattcgggtggttatcc 1252971  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 141 - 335
Target Start/End: Complemental strand, 21101890 - 21101696
Alignment:
Q  141 ctcatctatgaatcttagaaatacattagcatactcttttgtcttgatagttctacaaacggtcaactctatcttatctaccttatcaaggttgaaagag 240  Q
    ||||||||||| ||||| || ||||  |||||||| |||| ||||||||||||||| ||| | ||||  |||||| ||||||||| ||| |  |||||||    
T  21101890 ctcatctatgagtcttaaaagtacaccagcatactattttctcttgatagttctaccaacagacaaccatatcttgtctaccttaccaaagacgaaagag 21101791  T
Q  241 taaaattattatgcaacgttcagattaggatttcggcctaattttgagctcattcaccatttttataacaattttcctaattcgagcggttatcc 335  Q
    |||||||| |||||||| |||||||||||| |||||| || || | || ||||||||| || ||||||||||||  | |||||| || |||||||    
T  21101790 taaaattactatgcaacattcagattaggacttcggcttatttctaagttcattcaccgttgttataacaatttctccaattcgggctgttatcc 21101696  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 21227828 - 21227959
Alignment:
Q  99 atagatttaaattagagttcttaagtttatcataaatgttctctcatctatgaatcttagaaatacattagcatactcttttgtcttgatagttctacaa 198  Q
    |||||| ||||||||||||| | | |||||| |||| |||| ||||||||| |||||||||| ||||| ||||||||| ||  ||||| |||||||||||    
T  21227828 atagatataaattagagttcctgaatttatcctaaaggttccctcatctattaatcttagaagtacatcagcatactc-ttcctcttggtagttctacaa 21227926  T
Q  199 acggtcaactctatcttatctaccttatcaagg 231  Q
    || | |||| ||||||| |||| |||| |||||    
T  21227927 acaggcaaccctatcttgtctatcttaccaagg 21227959  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 8157882 - 8158001
Alignment:
Q  80 tctcaaagataattgaaacatagatttaaattagagttcttaagtttatcataaatgttctctcatctatgaatcttagaaatacattagcatactcttt 179  Q
    ||||| || ||||||||||||||| |||||||||| ||||||| |||||| || | |||  |||||||||||||||||||| ||||| |  |||||  ||    
T  8157882 tctcagaggtaattgaaacatagacttaaattagaattcttaaatttatcctagaggtttcctcatctatgaatcttagaagtacatcaaaatact-att 8157980  T
Q  180 tgtcttgatagttctacaaac 200  Q
      |||||||||||||||||||    
T  8157981 cctcttgatagttctacaaac 8158001  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 10480306 - 10480234
Alignment:
Q  215 tatctaccttatcaaggttgaaa-gagtaaaattattatgcaacgttcagattaggatttcggcctaattttg 286  Q
    ||||||||||| ||| | ||||| ||||||||||| |||||||||| | ||||||||||||||||||||||||    
T  10480306 tatctaccttaccaaagatgaaaagagtaaaattactatgcaacgtacggattaggatttcggcctaattttg 10480234  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 19398500 - 19398429
Alignment:
Q  89 taattgaaacatagatttaaattagagttcttaagtttatcataaatgttctctcatctatgaatcttagaa 160  Q
    ||||||||||||||| |||||||||||||| ||| |||||| |||| ||| | |||||| ||||||||||||    
T  19398500 taattgaaacatagacttaaattagagttcctaaatttatcctaaaggttatgtcatctttgaatcttagaa 19398429  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 18495903 - 18495941
Alignment:
Q  128 tcataaatgttctctcatctatgaatcttagaaatacat 166  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  18495903 tcataaaggttccctcatctatgaatcttagaaatacat 18495941  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 1731481 - 1731561
Alignment:
Q  80 tctcaaagataattgaaacatagatttaaattagagttcttaagtttatcataaatgttctctcatctatgaatcttagaa 160  Q
    |||||||| |||||||| || | | ||| |||||||||| ||| |||||| |||| ||||  |||| ||||||||||||||    
T  1731481 tctcaaaggtaattgaagcaaatacttagattagagttcctaaatttatcctaaaggttccatcatttatgaatcttagaa 1731561  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 283
Target Start/End: Complemental strand, 22537998 - 22537825
Alignment:
Q  107 aaattagagttcttaagtttatcataaatgttctctcatctatgaatcttagaaatacattagcatactcttttgtcttgatagttctacaaacggtcaa 206  Q
    ||||||| |||| ||| ||| || |||  |||| ||||| |||||||||||||| ||||| ||||||||||   |||||| |||||||||| |||| |||    
T  22537998 aaattagggttcctaaatttttcctaatggttcactcatatatgaatcttagaagtacatcagcatactct---gtcttggtagttctacatacgggcaa 22537902  T
Q  207 ctctatcttatctaccttatcaaggttgaaa-gagtaaaattattatgcaacgttcagattaggatttcggcctaatt 283  Q
    |  || ||  ||||||||| ||| | | ||| ||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  22537901 cgtta-ctcgtctaccttaccaatgataaaaagagtagaattactatgcaacgttcatattaggatttcggcctaatt 22537825  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 26614886 - 26614809
Alignment:
Q  89 taattgaaacatagatttaaattagagttcttaagtttatcataaatgttctctcatctatgaatcttagaaatacat 166  Q
    |||||||| |||| | |||||||||||||| ||| |||||| |||||||||| |||| |||||||||||||| |||||    
T  26614886 taattgaagcatatacttaaattagagttcctaaatttatcttaaatgttctatcatttatgaatcttagaagtacat 26614809  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 26614800 - 26614738
Alignment:
Q  241 taaaattattatgcaacgttcagattaggatttcggcctaattttgagctcattcaccatttt 303  Q
    |||||||| | ||||||||||||||||||||||||| || ||| | || ||||||||| ||||    
T  26614800 taaaattactttgcaacgttcagattaggatttcggtcttattctaagttcattcaccgtttt 26614738  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 27659929 - 27659966
Alignment:
Q  188 tagttctacaaacggtcaactctatcttatctacctta 225  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  27659929 tagttctacaaacggacaaccctatcttatctacctta 27659966  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 270
Target Start/End: Original strand, 26335738 - 26335866
Alignment:
Q  142 tcatctatgaatcttagaaatacattagcatactcttttgtcttgatagttctacaaacggtcaactctatcttatctaccttatcaaggttgaaagagt 241  Q
    ||||||||||||||||||| ||||| | |||||||| |  ||| ||| ||| |||| | || |||| ||||||  |||||| |  ||| | |||||||||    
T  26335738 tcatctatgaatcttagaagtacatcaacatactctctcttctcgatggttatacatatgggcaaccctatctcgtctaccgtgccaaagatgaaagagt 26335837  T
Q  242 aaaattattatgcaacgttcagattagga 270  Q
    ||||||||||||||| ||||  |||||||    
T  26335838 aaaattattatgcaatgttcgaattagga 26335866  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 27418757 - 27418792
Alignment:
Q  131 taaatgttctctcatctatgaatcttagaaatacat 166  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27418757 taaatgttccctcatctatgaatcttagaaatacat 27418792  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 27419903 - 27419938
Alignment:
Q  131 taaatgttctctcatctatgaatcttagaaatacat 166  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27419903 taaatgttccctcatctatgaatcttagaaatacat 27419938  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 34103913 - 34103963
Alignment:
Q  128 tcataaatgttctctcatctatgaatcttagaaatacattagcatactctt 178  Q
    ||||||| ||| |||||| |||||||||||||| |||||||| ||||||||    
T  34103913 tcataaaggttttctcatatatgaatcttagaagtacattagaatactctt 34103963  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 17017315 - 17017267
Alignment:
Q  189 agttctacaaacggtcaactctatcttatctaccttatcaaggttgaaa 237  Q
    |||||||||||||| |||| |||| | |||||||||||||||| |||||    
T  17017315 agttctacaaacgggcaaccctatttcatctaccttatcaaggatgaaa 17017267  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 23014247 - 23014167
Alignment:
Q  80 tctcaaagataattgaaacatagatttaaattagagtt-cttaagtttatcataaatgttctctcatctatgaatcttagaa 160  Q
    ||||| || ||||| ||||||| |||||||| |||||| ||||| |||||| ||||||||| || | |||||||||||||||    
T  23014247 tctcagaggtaattaaaacatatatttaaataagagtttcttaa-tttatcctaaatgttccctaacctatgaatcttagaa 23014167  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 23031596 - 23031628
Alignment:
Q  128 tcataaatgttctctcatctatgaatcttagaa 160  Q
    |||||||||||| ||||||||||||||||||||    
T  23031596 tcataaatgttccctcatctatgaatcttagaa 23031628  T

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