View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2743_low_6 (Length: 350)
Name: NF2743_low_6
Description: NF2743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2743_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 89 - 335
Target Start/End: Original strand, 1164695 - 1164941
Alignment:
| Q |
89 |
aattgactcactgcttggtcttcacatatatcatatgatattaaatttaatctgcagcaatttcatgatggatttttattccctcccgccttgtttttca |
188 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1164695 |
aattgactcgctgcttggtcttcacatatatcatatgacattaaatttaatctgcagcaatttcatgatggatttttattccctcccgccttgtttttca |
1164794 |
T |
|
| Q |
189 |
ccactcatgcggactcattaaaaggcctcatgaactgattttcatacgtggtgctataagttggggaaaacactccattcggaatatcaatgtgactgta |
288 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1164795 |
ccactcatggggactcattaaaaggcctcatgaactgattttcatacgtggtgctataagttggggaaaacactccattcggaatatcaatgtgactgta |
1164894 |
T |
|
| Q |
289 |
actgtgttctttctccctgtctctcggtcttacttctgtcgactttg |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1164895 |
actgtgttctttctccctgtctctcggtcttacttctgtcgactttg |
1164941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1164075 - 1164148
Alignment:
| Q |
1 |
cttcaagaaaaattgcctatgttttcataatgttaataactatactagtgtgttctcctttatgtacatctcct |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
1164075 |
cttcaagaaaaattgcctatgttttcataatgttaataactatactagtatgttctcctttatgcacatctcct |
1164148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 2376258 - 2376324
Alignment:
| Q |
1 |
cttcaagaaaaattgcctatgttttcataatgttaataactatactagtgtgttctcctttatgtac |
67 |
Q |
| |
|
|||||||| |||||| ||||||||| |||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
2376258 |
cttcaagacaaattggttatgttttcttaattttaataactgtactagtatgttctcctttatgtac |
2376324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2379813 - 2379747
Alignment:
| Q |
1 |
cttcaagaaaaattgcctatgttttcataatgttaataactatactagtgtgttctcctttatgtac |
67 |
Q |
| |
|
|||||||| |||||| ||||||||| |||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
2379813 |
cttcaagacaaattggttatgttttcttaattttaataactgtactagtatgttctcctttatgtac |
2379747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 1710139 - 1710279
Alignment:
| Q |
100 |
tgcttggtcttcacatatatcatatgatattaaatttaatctgcagcaatttcatgatggatttttattccctcccgccttgtttttcaccactcatgcg |
199 |
Q |
| |
|
|||||||||||||||||||| | | | || |||||||| ||| |||||||||| ||||||||||| || |||||||| ||| |||||| | |
|
|
| T |
1710139 |
tgcttggtcttcacatatatgacacaacatcaaatttaacctgtagcaatttcagaatggattttta----cttttcccttgtttctcagcactcacg-- |
1710232 |
T |
|
| Q |
200 |
gactcattaaaaggcctcatgaactgattttcatacgtggtgctataa |
247 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
1710233 |
-actcattgaaaggcctcctgaactgattctcagacgtggtgctataa |
1710279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1524550 - 1524484
Alignment:
| Q |
1 |
cttcaagaaaaattgcctatgttttcataatgttaataactatactagtgtgttctcctttatgtac |
67 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
1524550 |
cttcaagacaaattgcttatgttttcataattttaataactgtactagtatgttctcctttatgtac |
1524484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University