View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2744_high_11 (Length: 249)

Name: NF2744_high_11
Description: NF2744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2744_high_11
NF2744_high_11
[»] chr6 (4 HSPs)
chr6 (1-237)||(25934692-25934928)
chr6 (112-177)||(13496110-13496175)
chr6 (119-177)||(12904319-12904377)
chr6 (112-177)||(7082994-7083059)
[»] chr7 (3 HSPs)
chr7 (112-177)||(47342436-47342501)
chr7 (119-177)||(7670435-7670493)
chr7 (119-177)||(41132445-41132503)
[»] chr5 (4 HSPs)
chr5 (112-177)||(42473888-42473953)
chr5 (110-196)||(20688032-20688118)
chr5 (140-201)||(2143155-2143216)
chr5 (142-198)||(22665184-22665240)
[»] chr8 (4 HSPs)
chr8 (111-177)||(27718896-27718962)
chr8 (119-206)||(42367730-42367817)
chr8 (112-177)||(33105385-33105450)
chr8 (121-162)||(38488024-38488065)
[»] chr4 (8 HSPs)
chr4 (119-177)||(49952571-49952629)
chr4 (120-189)||(9221960-9222029)
chr4 (111-196)||(20799377-20799462)
chr4 (111-188)||(4916148-4916225)
chr4 (140-177)||(9615490-9615527)
chr4 (112-177)||(11949765-11949830)
chr4 (112-177)||(51847957-51848022)
chr4 (112-152)||(9847046-9847086)
[»] chr1 (4 HSPs)
chr1 (119-177)||(23524825-23524883)
chr1 (112-191)||(47417777-47417856)
chr1 (112-158)||(49843428-49843474)
chr1 (112-201)||(42045350-42045439)
[»] scaffold0135 (1 HSPs)
scaffold0135 (120-189)||(32613-32682)
[»] chr2 (8 HSPs)
chr2 (113-189)||(10195652-10195728)
chr2 (115-177)||(36359311-36359373)
chr2 (112-177)||(32986006-32986071)
chr2 (112-177)||(43424653-43424718)
chr2 (140-176)||(17842715-17842751)
chr2 (121-177)||(19159944-19160000)
chr2 (113-177)||(19967413-19967477)
chr2 (133-177)||(39688271-39688315)
[»] chr3 (1 HSPs)
chr3 (112-158)||(8382100-8382146)
[»] scaffold0012 (1 HSPs)
scaffold0012 (112-177)||(118813-118878)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 25934692 - 25934928
Alignment:
Q  1 aaagaggaattaagagggaaagaagaaaaagtattaagggttggagatggattttcaaatatcattcaagttcaaggaaaagagatcaagaccttatgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25934692 aaagaggaattaagagggaaagaagaaaaagtattaagggttggagatggattttcaaatatcattcaagttcaaggaaaagagatcaagaccttatgtt 25934791  T
Q  101 caaaacctaaggtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaacactggtcaccaccagaaaagaaa 200  Q
    ||||||||||| || || ||||||||  ||| |||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||||| |||||||||    
T  25934792 caaaacctaagatcatcgtgagcttagatcagttgatttgaacaatgaataatatatgtaagattcggggttcaaacactgatcaccaccggaaaagaaa 25934891  T
Q  201 acaaaacctaagaaaatatcaccaaatacatcttcct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  25934892 acaaaacctaagaaaatatcaccaaatacatcttcct 25934928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 13496110 - 13496175
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||| |||||||| |||| ||||| ||||||||| |||||||||| ||| ||||||||||||||    
T  13496110 gtcctcgtgagcttaactcagttgatatgaacaatgcataatatatgcaaggtccggagttcaaac 13496175  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 12904377 - 12904319
Alignment:
Q  119 tgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||||| |||| ||||| ||||||||| |||||||||| ||| | ||||||||||||    
T  12904377 tgagcttacctcagttgatatgaacaatgcataatatatgcaaggttcggagttcaaac 12904319  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 7083059 - 7082994
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||| |||||||| |||||||| |  | |||||| |||||||||| |||||| |||||||||||    
T  7083059 gtcctcgtgagcttagctcaattggtaaggacaatgcataatatatgcaagatctggagttcaaac 7082994  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 47342501 - 47342436
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    ||||||||||||||| |||| ||| |||| |||||| |||||||||| ||| ||||||||||||||    
T  47342501 gtcctcatgagcttaactcagttggtttggacaatgcataatatatgcaaggtccggagttcaaac 47342436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 7670435 - 7670493
Alignment:
Q  119 tgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||||| |||| ||| ||||||||||| |||||||||| ||| ||||| ||||||||    
T  7670435 tgagcttagctcagttggtttgaacaatgcataatatatgcaaggtccggggttcaaac 7670493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 41132445 - 41132503
Alignment:
Q  119 tgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||||| |||||||||||||||||||  |||| ||||| ||| | ||||||||||||    
T  41132445 tgagcttagctcaattgatttgaacaatacataaaatatgcaaggttcggagttcaaac 41132503  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 42473888 - 42473953
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||| |||||||| ||||||||||| |||||||| |||||||||| ||| ||||| ||||||||    
T  42473888 gtcctcgtgagcttagctcaattgattggaacaatgcataatatatgcaaggtccggggttcaaac 42473953  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 20688032 - 20688118
Alignment:
Q  110 aggtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaacactggtcaccaccagaaaa 196  Q
    ||||| || ||| |||| |||| ||| |||| |||||| |||||||||| ||| |||||||||||||| |||| |||||||| ||||    
T  20688032 aggtcatcgtgaacttagctcagttggtttggacaatgcataatatatgcaaggtccggagttcaaactctggccaccaccaaaaaa 20688118  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 2143155 - 2143216
Alignment:
Q  140 gaacaatgaataatatatgaaagatccggagttcaaacactggtcaccaccagaaaagaaaa 201  Q
    |||||||| |||||||||| ||| |||| ||||||||| ||||||||||||| |||| ||||    
T  2143155 gaacaatgtataatatatgcaaggtccgaagttcaaactctggtcaccaccaaaaaaaaaaa 2143216  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 22665240 - 22665184
Alignment:
Q  142 acaatgaataatatatgaaagatccggagttcaaacactggtcaccaccagaaaaga 198  Q
    |||||| |||| ||||| |||||||||||||||||| | || |||||||| ||||||    
T  22665240 acaatgtataaaatatgcaagatccggagttcaaaccccggccaccaccaaaaaaga 22665184  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 27718962 - 27718896
Alignment:
Q  111 ggtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    ||||||| |||||||| |||| ||||| || |||||| |||||||||| ||| ||||||||||||||    
T  27718962 ggtcctcgtgagcttagctcagttgatatggacaatgcataatatatgcaaggtccggagttcaaac 27718896  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 42367730 - 42367817
Alignment:
Q  119 tgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaacactggtcaccaccagaaaagaaaacaaaa 206  Q
    |||||||| |||| |||||  |||||||| |||||||||||||  |||||||||| ||| |||| |||||| | |||| |||| ||||    
T  42367730 tgagcttagctcagttgataagaacaatgcataatatatgaaaagtccggagttcgaaccctggacaccacaaaaaaaaaaaaaaaaa 42367817  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 33105385 - 33105450
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||| |||||||| ||||  || ||||||||||| |||||||||| ||| ||||| ||||||||    
T  33105385 gtcctcgtgagcttagctcagctggtttgaacaatgcataatatatgcaaggtccggggttcaaac 33105450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 38488065 - 38488024
Alignment:
Q  121 agcttatctcaattgatttgaacaatgaataatatatgaaag 162  Q
    ||||||||||||||| | ||||||||| ||||||||||||||    
T  38488065 agcttatctcaattggtatgaacaatgcataatatatgaaag 38488024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 49952629 - 49952571
Alignment:
Q  119 tgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||||| ||||||||||||| |||||| |||||||||| ||| ||||| ||||||||    
T  49952629 tgagcttaactcaattgatttggacaatgcataatatatgtaaggtccggggttcaaac 49952571  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 9221960 - 9222029
Alignment:
Q  120 gagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaacactggtcaccac 189  Q
    ||||||| |||| ||| ||||||||||| |||||||||| ||||||| ||| |||||| ||| |||||||    
T  9221960 gagcttagctcagttggtttgaacaatgcataatatatgtaagatccagagctcaaaccctgatcaccac 9222029  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 20799462 - 20799377
Alignment:
Q  111 ggtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaacactggtcaccaccagaaaa 196  Q
    ||||||| |||||||| |||| ||| |  | |||||| |||||||||| ||| ||||| |||||||| ||||||||||||| ||||    
T  20799462 ggtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccggggttcaaaccctggtcaccaccaaaaaa 20799377  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 4916148 - 4916225
Alignment:
Q  111 ggtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaacactggtcacca 188  Q
    ||||||| ||| |||| |||| ||| ||||||||||| |||||||||| |||||  || |||||||| |||| |||||    
T  4916148 ggtcctcgtgaacttagctcagttggtttgaacaatgcataatatatgtaagatttggggttcaaaccctggccacca 4916225  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 9615527 - 9615490
Alignment:
Q  140 gaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  9615527 gaacaatgcataatatatgtaagatccggagttcaaac 9615490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 11949830 - 11949765
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    ||||||||||||||| |||| ||| | || |||||| |||||||||| ||| ||||| ||||||||    
T  11949830 gtcctcatgagcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcaaac 11949765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 51847957 - 51848022
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||||| || ||| |||| ||||||||||||||| |||| ||||  ||||||||||| ||||||    
T  51847957 gtcctcataagtttacctcagttgatttgaacaatgcataaaatatacaagatccggagatcaaac 51848022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 9847086 - 9847046
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataa 152  Q
    ||||||||||||||| |||||||||| |||||||| |||||    
T  9847086 gtcctcatgagcttagctcaattgatatgaacaataaataa 9847046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 23524825 - 23524883
Alignment:
Q  119 tgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||||| |||| |||||| |||||||| |||| ||||||||||| ||||||||||||    
T  23524825 tgagcttaactcagttgattggaacaatgcataaaatatgaaagattcggagttcaaac 23524883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 47417777 - 47417856
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaacactggtcaccacca 191  Q
    |||||||||| |||| |||||||| || | |||||| |||||||||| ||| | ||||||||||||   |||||||||||    
T  47417777 gtcctcatgaacttaactcaattggttaggacaatgcataatatatgcaaggttcggagttcaaacctcggtcaccacca 47417856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 49843428 - 49843474
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatg 158  Q
    |||||| |||||||| |||||||| ||||||||||| ||||||||||    
T  49843428 gtcctcgtgagcttaactcaattggtttgaacaatgcataatatatg 49843474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 42045439 - 42045350
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaacactggtcaccaccagaaaagaaaa 201  Q
    |||||| |||||||| |||| ||| | || |||||| |||||||||| ||| || ||||||||||| | || |||||||| |||| ||||    
T  42045439 gtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtctggagttcaaaccccggccaccaccaaaaaaaaaaa 42045350  T

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Target: scaffold0135 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 32613 - 32682
Alignment:
Q  120 gagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaacactggtcaccac 189  Q
    ||||||| |||| ||| ||||||||||| |||||||||| ||||||| ||| |||||| ||| |||||||    
T  32613 gagcttagctcagttggtttgaacaatgcataatatatgtaagatccagagctcaaaccctgatcaccac 32682  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 10195728 - 10195652
Alignment:
Q  113 tcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaacactggtcaccac 189  Q
    ||||| |||||||| |||| ||||| || | |||| |||||||||| |||||| ||||||||||| ||| |||||||    
T  10195728 tcctcgtgagcttagctcagttgatatggataatgcataatatatgcaagatctggagttcaaaccctgatcaccac 10195652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 36359311 - 36359373
Alignment:
Q  115 ctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||||||||| |||  |||||||| |||||| |||||||||| ||| ||||| ||||||||    
T  36359311 ctcatgagcttaactcggttgatttggacaatgcataatatatgcaaggtccggggttcaaac 36359373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 32986006 - 32986071
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||| |||| ||| |||| ||||| |||| ||||||||||||||  |||||||||| |||||||    
T  32986006 gtcctcttgagtttaactcagttgatatgaaaaatgaataatatatacaagatccggaattcaaac 32986071  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 43424653 - 43424718
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    ||||||||||||||| |||| |||||| |||||||| |||| ||||| ||  | ||||||||||||    
T  43424653 gtcctcatgagcttagctcagttgattggaacaatgcataaaatatgcaaagttcggagttcaaac 43424718  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 17842751 - 17842715
Alignment:
Q  140 gaacaatgaataatatatgaaagatccggagttcaaa 176  Q
    |||||||| |||||||||| |||||||||||||||||    
T  17842751 gaacaatgcataatatatgtaagatccggagttcaaa 17842715  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 19159944 - 19160000
Alignment:
Q  121 agcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||| |||| ||||| ||||||||| |||||||||| ||| | ||||||||||||    
T  19159944 agcttaactcagttgatatgaacaatgcataatatatgcaaggttcggagttcaaac 19160000  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 19967413 - 19967477
Alignment:
Q  113 tcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    ||||| |||||||| |||| ||||| ||||||||| ||||||| || ||| | ||||||||||||    
T  19967413 tcctcgtgagcttagctcagttgatatgaacaatgcataatatgtgcaaggttcggagttcaaac 19967477  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 39688271 - 39688315
Alignment:
Q  133 ttgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||||||||||||||||| ||||| |||||| || ||||||||    
T  39688271 ttgatttgaacaatgaataaaatatgcaagatctggggttcaaac 39688315  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 8382100 - 8382146
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatg 158  Q
    |||||| ||||  ||||||||||||| ||||||||||||||||||||    
T  8382100 gtcctcgtgagtatatctcaattgatatgaacaatgaataatatatg 8382146  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 118813 - 118878
Alignment:
Q  112 gtcctcatgagcttatctcaattgatttgaacaatgaataatatatgaaagatccggagttcaaac 177  Q
    |||||| |||||||| |||| ||| ||||||||||| |||| ||||| ||| || |||||||||||    
T  118813 gtcctcgtgagcttagctcagttggtttgaacaatgcataaaatatgtaaggtctggagttcaaac 118878  T

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