View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2744_high_4 (Length: 357)

Name: NF2744_high_4
Description: NF2744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2744_high_4
NF2744_high_4
[»] chr7 (11 HSPs)
chr7 (24-343)||(43996290-43996609)
chr7 (189-282)||(34681690-34681782)
chr7 (197-285)||(27338257-27338344)
chr7 (189-307)||(35599818-35599935)
chr7 (189-312)||(18926296-18926417)
chr7 (180-265)||(35567129-35567214)
chr7 (141-186)||(16100109-16100154)
chr7 (215-280)||(33922782-33922846)
chr7 (138-285)||(36973331-36973479)
chr7 (130-176)||(37352366-37352412)
chr7 (141-230)||(10200618-10200707)
[»] chr8 (9 HSPs)
chr8 (192-312)||(39691133-39691252)
chr8 (163-285)||(31264992-31265113)
chr8 (136-287)||(25279922-25280070)
chr8 (192-286)||(1502689-1502783)
chr8 (193-287)||(37564352-37564445)
chr8 (189-260)||(29487075-29487146)
chr8 (141-220)||(24733231-24733310)
chr8 (207-285)||(15352105-15352181)
chr8 (192-260)||(25382642-25382710)
[»] chr6 (3 HSPs)
chr6 (141-287)||(25028666-25028811)
chr6 (189-285)||(6586433-6586528)
chr6 (165-229)||(31702732-31702796)
[»] chr2 (17 HSPs)
chr2 (165-285)||(13538391-13538510)
chr2 (141-289)||(14663147-14663295)
chr2 (189-285)||(44195502-44195597)
chr2 (165-313)||(18684327-18684476)
chr2 (164-282)||(41543975-41544093)
chr2 (171-232)||(9049148-9049209)
chr2 (192-285)||(32859780-32859872)
chr2 (181-284)||(38292364-38292467)
chr2 (178-232)||(12848477-12848531)
chr2 (168-220)||(13197309-13197361)
chr2 (194-285)||(8964387-8964477)
chr2 (193-232)||(9153494-9153533)
chr2 (137-259)||(31017271-31017393)
chr2 (194-284)||(2825977-2826066)
chr2 (189-263)||(36480511-36480584)
chr2 (192-261)||(45372735-45372803)
chr2 (139-211)||(32787548-32787619)
[»] chr4 (10 HSPs)
chr4 (164-287)||(2063468-2063590)
chr4 (189-285)||(48097947-48098042)
chr4 (192-286)||(24546727-24546820)
chr4 (165-286)||(19597142-19597262)
chr4 (165-313)||(49532243-49532389)
chr4 (192-279)||(52014573-52014658)
chr4 (191-280)||(12912862-12912950)
chr4 (189-307)||(9044208-9044324)
chr4 (189-287)||(53261551-53261648)
chr4 (132-232)||(51291133-51291233)
[»] chr1 (9 HSPs)
chr1 (179-282)||(5423752-5423854)
chr1 (161-285)||(5250889-5251012)
chr1 (189-287)||(44442243-44442340)
chr1 (141-284)||(46592437-46592579)
chr1 (191-285)||(1048688-1048780)
chr1 (208-278)||(1600951-1601020)
chr1 (141-220)||(34596089-34596167)
chr1 (142-212)||(52076450-52076520)
chr1 (204-265)||(26857222-26857282)
[»] chr3 (9 HSPs)
chr3 (141-314)||(54290746-54290917)
chr3 (192-284)||(11692729-11692820)
chr3 (189-284)||(43803965-43804059)
chr3 (163-260)||(30299300-30299396)
chr3 (192-232)||(33072130-33072170)
chr3 (237-313)||(39400340-39400416)
chr3 (139-197)||(49541889-49541945)
chr3 (190-287)||(53040462-53040558)
chr3 (140-232)||(53766660-53766752)
[»] scaffold0011 (1 HSPs)
scaffold0011 (192-287)||(219183-219277)
[»] chr5 (6 HSPs)
chr5 (192-285)||(16161414-16161506)
chr5 (189-313)||(25437890-25438014)
chr5 (189-284)||(967098-967192)
chr5 (132-284)||(24040983-24041133)
chr5 (246-287)||(4695065-4695106)
chr5 (192-232)||(14309106-14309146)
[»] scaffold0268 (1 HSPs)
scaffold0268 (141-230)||(20216-20305)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 24 - 343
Target Start/End: Complemental strand, 43996609 - 43996290
Alignment:
Q  24 taaataaccaacttcatccatcaatctagcttcccaagcatctcccctgacactctctttacgcgcaaagtcaatcttgccctccaaagctcttcaccag 123  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| ||||||||||||||||    
T  43996609 taaatgaccaacttcatccatcaatctagcttcccaagcatctccactgacactctctttacgtgcgaagtcaatcttgcccttcaaagctcttcaccag 43996510  T
Q  124 tgtcattctttttaggaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatg 223  Q
    ||||||||||||||| ||||||||||| |||||||||| |||||| ||||||| ||||||||| | | ||||||||||||||| || |||||||||| ||    
T  43996509 tgtcattctttttagaaaaatgttaaccagtgtctctagggcactttttaagagccttaaatggagattttttataaaaatttatgcatttaatgcattg 43996410  T
Q  224 gaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtctcgatgacacttgttaacaaaacccttctttttaat 323  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  43996409 aaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtcccgatgacactcgttaacaaaacccttctttttaat 43996310  T
Q  324 atgtcatagttcttcagctt 343  Q
    ||||||||||||||||||||    
T  43996309 atgtcatagttcttcagctt 43996290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 34681782 - 34681690
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaaga 282  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||| | |||| |||||||| |||| |||| |||||||||||    
T  34681782 aactttttataaaaacttgtgtatttaatgcattggaaattgaac-tatttgacttttgtaaaaaataatttcctaatttagaatgcttaaaga 34681690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 27338344 - 27338257
Alignment:
Q  197 ataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 285  Q
    |||||||||||||||||||||  | |||||||||||||  ||| | || |||||||||||||||||||| |||| ||||||||||||||    
T  27338344 ataaaaatttgtgtatttaatatattggaaattgaactg-tttgatttttttaaagaataattttctaatttagcatgcttaaagagtg 27338257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 307
Target Start/End: Original strand, 35599818 - 35599935
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtct 288  Q
    |||||||||| |||| || |||||| |||||| || || ||||||| |||| | || ||||||||||||||| |||| |||||||| ||||||||| |||    
T  35599818 aactttttatgaaaagttatgtattcaatgcattgaaatttgaact-atttgaattttttaaagaataatttcctaatttagtatgtttaaagagtatct 35599916  T
Q  289 cgatgacacttgttaacaa 307  Q
    ||  | |||| ||||||||    
T  35599917 cggaggcactcgttaacaa 35599935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 312
Target Start/End: Complemental strand, 18926417 - 18926296
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtct 288  Q
    |||||||||| |||| ||||||||| |||||| || |||||||||| |||| || | |||||||||||||||  | | |||  |||||||||||||| |     
T  18926417 aactttttatgaaaagttgtgtattcaatgcattgaaaattgaact-atttcacctttttaaagaataatttcatgatttaaaatgcttaaagagtgcc- 18926320  T
Q  289 cgatgacacttgttaacaaaaccc 312  Q
    | | |||||| |||||||||||||    
T  18926319 ctaggacactcgttaacaaaaccc 18926296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 35567214 - 35567129
Alignment:
Q  180 ttaaatgaaaacttttt-ataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaa 265  Q
    |||||||| |||||||| |||||||| ||||||||||||| | |||||||| ||  ||||| |||| |||||| |||||||||||||    
T  35567214 ttaaatgataacttttttataaaaatatgtgtatttaatgtattggaaatt-aaaatatttgacttttttaaaaaataattttctaa 35567129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 16100109 - 16100154
Alignment:
Q  141 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatg 186  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||    
T  16100109 aaatattaacgagtgtttctaagacactctttaagatccttaaatg 16100154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 33922782 - 33922846
Alignment:
Q  215 aatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaa 280  Q
    |||||| || |||||||||| |||| |||| |||||||||||||||||||| |||| |||||||||    
T  33922782 aatgcattgaaaattgaact-atttgacttttttaaagaataattttctaatttagaatgcttaaa 33922846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 285
Target Start/End: Complemental strand, 36973479 - 36973331
Alignment:
Q  138 ggaaaatgttaacgagtgtctctaaggcactctttaagatccttaaat-gaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaactta 236  Q
    |||||||||||| ||||| ||||| | |||||||||||    |||||| | ||  ||||||| ||||||||| |||||| |||| ||||||||||| |||    
T  36973479 ggaaaatgttaatgagtgcctctaggacactctttaagggttttaaatagtaatttttttatgaaaatttgtatatttattgcattggaaattgaa-tta 36973381  T
Q  237 ttt-aacttgtttaaagaataattttctaacttagtatgcttaaagagtg 285  Q
    ||| |  || |||||||||||| || |||| || | ||||||||||||||    
T  36973380 tttgattttttttaaagaataacttcctaatttggaatgcttaaagagtg 36973331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 37352366 - 37352412
Alignment:
Q  130 tctttttaggaaaatgttaacgagtgtctctaaggcactctttaaga 176  Q
    ||||||| || ||||||||||||||||| || |||||||||||||||    
T  37352366 tcttttttgggaaatgttaacgagtgtccctgaggcactctttaaga 37352412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 10200707 - 10200618
Alignment:
Q  141 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattg 230  Q
    ||||||||||||||| ||  | | |||||||||||  | |||||||| || |||||||| ||| || ||||||||||||| | |||||||    
T  10200707 aaatgttaacgagtgccttcatgacactctttaagcactttaaatgataagtttttatagaaagttatgtatttaatgcatttgaaattg 10200618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 312
Target Start/End: Original strand, 39691133 - 39691252
Alignment:
Q  192 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtctcga 291  Q
    ||||||| |||||||||||||| |||||| || |||||||||| |||| |||| |||||||||||||||| |||  | | ||||||||||||||||||||    
T  39691133 tttttatgaaaatttgtgtattcaatgcattgaaaattgaact-atttgacttttttaaagaataattttttaatgtggaatgcttaaagagtgtctcga 39691231  T
Q  292 tgacacttgttaacaaaaccc 312  Q
     | |||| |||||||||||||    
T  39691232 gggcactcgttaacaaaaccc 39691252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 31265113 - 31264992
Alignment:
Q  163 ggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttc 262  Q
    |||||||||||||| ||| ||||   |||||||||| |||| ||||||||||||| || ||||||||||| || ||| |||| |||||||||||| || |    
T  31265113 ggcactctttaagagcctaaaatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaa-ttgtttgacttttttaaagaataacttcc 31265015  T
Q  263 taacttagtatgcttaaagagtg 285  Q
    ||| |||| ||||||||||||||    
T  31265014 taatttagcatgcttaaagagtg 31264992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 287
Target Start/End: Complemental strand, 25280070 - 25279922
Alignment:
Q  136 taggaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaactt 235  Q
    |||| ||||||||||||||| | ||  |||||||||||||| ||| ||||   || ||||||| |||| || |||||||||| || ||||||||||| ||    
T  25280070 tagggaaatgttaacgagtgcccctg-ggcactctttaagagcctaaaatagtaaatttttatgaaaacttatgtatttaatacattggaaattgaa-tt 25279973  T
Q  236 atttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 287  Q
    |||| |||| |||||||||||| || |||| |||| ||||||||||||||||    
T  25279972 atttgactt-tttaaagaataacttcctaatttagcatgcttaaagagtgtc 25279922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 1502689 - 1502783
Alignment:
Q  192 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgt 286  Q
    ||||||| |||||||| |||||||||||| || ||||||||||  || || || ||||||||||||||| |||| |||| ||| |||||||||||    
T  1502689 tttttatgaaaatttgcgtatttaatgcattgaaaattgaactgtttgaatttttttaaagaataatttcctaatttagaatgtttaaagagtgt 1502783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 37564352 - 37564445
Alignment:
Q  193 ttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 287  Q
    |||||| |||| ||||||||||||| || |||||||||||| ||||| |||| |||||||||||||||  ||| |||| ||| ||||||||||||    
T  37564352 ttttatgaaaacttgtgtatttaatacattggaaattgaac-tatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtc 37564445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 29487075 - 29487146
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattt 260  Q
    |||||||||||||||| |||||||| |||||| || ||||||||||  || ||||| |||||||||||||||    
T  29487075 aactttttataaaaatatgtgtattaaatgcattgaaaattgaactatttaaacttttttaaagaataattt 29487146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 24733310 - 24733231
Alignment:
Q  141 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgca 220  Q
    |||||||||||||||||||   |||||||||||||  |||| |||   || |||||||||||||||||||| | ||||||    
T  24733310 aaatgttaacgagtgtctccggggcactctttaagtacctttaatagtaagtttttataaaaatttgtgtaatcaatgca 24733231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 15352105 - 15352181
Alignment:
Q  207 gtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 285  Q
    |||||||||||| | ||||||||||||| |||| |||| |||| ||||||||||| ||| |||| ||| ||||||||||    
T  15352105 gtgtatttaatg-attggaaattgaact-atttgacttttttacagaataattttttaatttagaatgtttaaagagtg 15352181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 25382710 - 25382642
Alignment:
Q  192 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattt 260  Q
    ||||||||||||   |||||||||||||| ||||||||| |||  ||||  || |||||||||||||||    
T  25382710 tttttataaaaacaagtgtatttaatgcattggaaattggactattttactttttttaaagaataattt 25382642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 287
Target Start/End: Original strand, 25028666 - 25028811
Alignment:
Q  141 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttattta 240  Q
    ||||||||| ||||| ||  ||||||||||||||||  |||||||   |||||||||||||||  |||||||| |||||| || ||||||||| | |||     
T  25028666 aaatgttaatgagtgcctgcaaggcactctttaagagtcttaaattttaactttttataaaaacgtgtgtattcaatgcattgaaaattgaac-tgtttg 25028764  T
Q  241 acttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 287  Q
    |||| |||||||||||||||||||| || | ||| ||||||||||||    
T  25028765 acttttttaaagaataattttctaattttgaatgtttaaagagtgtc 25028811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 6586433 - 6586528
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 285  Q
    |||||||||| ||||||| ||| || ||||||  |||||||||||| || | |||| || ||||| |||||| |||| |||||||||||||||||||    
T  6586433 aactttttatgaaaatttatgttttcaatgcatcggaaattgaact-atctgactttttcaaagattaatttcctaatttagtatgcttaaagagtg 6586528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 31702732 - 31702796
Alignment:
Q  165 cactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaatt 229  Q
    |||||||||||||||||||||   |||||||||||||||| |||||| | |||||| | ||||||    
T  31702732 cactctttaagatccttaaatagtaactttttataaaaatatgtgtaatcaatgcattagaaatt 31702796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 285
Target Start/End: Complemental strand, 13538510 - 13538391
Alignment:
Q  165 cactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttcta 264  Q
    |||||||||||   |||||||   |||||||||| |||| || |||||| |||||| ||||||||||| |||||| | || |||||||||||||||||||    
T  13538510 cactctttaagggtcttaaatagtaactttttatgaaaagttatgtattcaatgcattggaaattgaa-ttatttgaattttttaaagaataattttcta 13538412  T
Q  265 acttagtatgcttaaagagtg 285  Q
    | |||||||||||||||||||    
T  13538411 atttagtatgcttaaagagtg 13538391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 289
Target Start/End: Original strand, 14663147 - 14663295
Alignment:
Q  141 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaa-tttgtgtatttaatgcaatggaaattgaacttattt 239  Q
    |||||||||  ||||||||  ||||||||||||||   ||||||| | || |||||| ||||| |||||| |||||||| | ||||||||||||| ||||    
T  14663147 aaatgttaataagtgtctccgaggcactctttaagggtcttaaataataattttttaaaaaaaatttgtgcatttaatgtattggaaattgaact-attt 14663245  T
Q  240 aacttgtttaaagaataattttctaacttagtatgcttaaagagtgtctc 289  Q
     |||| |||||||||||||||| ||| |||  ||||||||| ||||||||    
T  14663246 gacttatttaaagaataattttttaatttaaaatgcttaaaaagtgtctc 14663295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 44195597 - 44195502
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 285  Q
    |||||||||||||||  ||||||||||||||| || |||||||| ||||||||||| | |||||||||||||  ||| |||  ||||||||||||||    
T  44195597 aactttttataaaaacatgtgtatttaatgcattgtaaattgaa-ttatttaacttttgtaaagaataatttcttaatttaaaatgcttaaagagtg 44195502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 313
Target Start/End: Complemental strand, 18684476 - 18684327
Alignment:
Q  165 cactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttcta 264  Q
    |||||||||||| |||  ||| | |||||||||| |||||||||||||||||| || ||||||||||| || | | |||| |||||||||||| || |||    
T  18684476 cactctttaagagcctagaataataactttttatgaaaatttgtgtatttaatacattggaaattgaa-ttgtatgacttttttaaagaataacttccta 18684378  T
Q  265 acttagtatgctt--aaagagtgtctcgatgacacttgttaacaaaaccct 313  Q
    | |||| ||||||  |||||||||| |||   |||| |||||||| |||||    
T  18684377 atttagcatgctttaaaagagtgtcccgagagcactcgttaacaagaccct 18684327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 41544093 - 41543975
Alignment:
Q  164 gcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttct 263  Q
    ||||||||||||   ||||||| | || ||||||| |||| || |||||| | |||| |||||||||||||  || || || ||||||||||||||| ||    
T  41544093 gcactctttaagggtcttaaataataattttttatgaaaaattatgtattcattgcattggaaattgaactatttgaatttttttaaagaataatttcct 41543994  T
Q  264 aacttagtatgcttaaaga 282  Q
    || ||| ||||||||||||    
T  41543993 aatttaatatgcttaaaga 41543975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 9049148 - 9049209
Alignment:
Q  171 ttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaa 232  Q
    |||||| |||||||| | ||||||||||||||||||||||| |||||||| || ||||||||    
T  9049148 ttaagaaccttaaataataactttttataaaaatttgtgtaattaatgcattgaaaattgaa 9049209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 32859872 - 32859780
Alignment:
Q  192 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 285  Q
    ||||||| |||| ||||||||||||| || |||||||||||| | ||| |||| |||||||||||| || |||| |||| ||| ||||||||||    
T  32859872 tttttatgaaaacttgtgtatttaatacattggaaattgaac-tgtttgacttttttaaagaataacttcctaatttagcatgtttaaagagtg 32859780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 284
Target Start/End: Complemental strand, 38292467 - 38292364
Alignment:
Q  181 taaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgt-ttaaagaataattttctaacttagtatgcttaa 279  Q
    |||||||||| ||||||| |||| |||||||||||||||| ||  |||||||| ||||| |||| | | |||||||||||| |||| |||  ||||||||    
T  38292467 taaatgaaaattttttatgaaaagttgtgtatttaatgcattgataattgaac-tatttcacttttctaaaagaataatttcctaatttaaaatgcttaa 38292369  T
Q  280 agagt 284  Q
    |||||    
T  38292368 agagt 38292364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 12848477 - 12848531
Alignment:
Q  178 ccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaa 232  Q
    |||||||||| |||||||||| ||| |||||||| ||| ||||||||||||||||    
T  12848477 ccttaaatgacaactttttatgaaagtttgtgtaattagtgcaatggaaattgaa 12848531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 13197361 - 13197309
Alignment:
Q  168 tctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgca 220  Q
    ||||||||||| |||||||| || ||||||||||||||| |||| ||||||||    
T  13197361 tctttaagatctttaaatgataattttttataaaaatttatgtaattaatgca 13197309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 8964477 - 8964387
Alignment:
Q  194 tttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 285  Q
    ||||| |||||||||||| | |||||| |||||||||||  ||||| |||| ||||||||||||||   ||| |||| ||||||||| ||||    
T  8964477 tttatgaaaatttgtgtaatcaatgcattggaaattgaa-atattttacttttttaaagaataattacttaatttagaatgcttaaacagtg 8964387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 9153494 - 9153533
Alignment:
Q  193 ttttataaaaatttgtgtatttaatgcaatggaaattgaa 232  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  9153494 ttttataaaaatttgtgtattcaatgcattggaaattgaa 9153533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 31017271 - 31017393
Alignment:
Q  137 aggaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaacttttt-ataaaaatttgtgtatttaatgcaatggaaattgaactt 235  Q
    ||||||||||||||||||| ||    |||| ||||||||  | ||||||||||| ||||| || |||| ||||||||| |||||| || ||||| ||  |    
T  31017271 aggaaaatgttaacgagtgccttcggggcattctttaagcactttaaatgaaaagtttttaatgaaaagttgtgtattaaatgcattgaaaatt-aaaat 31017369  T
Q  236 atttaacttgtttaaagaataatt 259  Q
    |||| |||| ||||||||||||||    
T  31017370 atttgacttttttaaagaataatt 31017393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 284
Target Start/End: Original strand, 2825977 - 2826066
Alignment:
Q  194 tttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagt 284  Q
    ||||||||||| |||||| | |||||| ||||||| ||| | |||| |||| |||||| ||||||||  ||  ||||||||||||||||||    
T  2825977 tttataaaaatgtgtgtaatcaatgcattggaaatcgaaat-attttacttttttaaaaaataatttcttattttagtatgcttaaagagt 2826066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 36480584 - 36480511
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttct 263  Q
    |||||||||||||||  ||||||||||||||| |||||||| |||  |||| |||| ||| || |||||||||||    
T  36480584 aactttttataaaaacatgtgtatttaatgcattggaaattaaac-aatttcactttttttaaaaataattttct 36480511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 45372735 - 45372803
Alignment:
Q  192 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataatttt 261  Q
    ||||||||||||  ||||||||||||||| | |||||| ||| |||| ||||| |||||| |||||||||    
T  45372735 tttttataaaaacatgtgtatttaatgcattagaaattaaac-tattaaacttttttaaaaaataatttt 45372803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 32787548 - 32787619
Alignment:
Q  139 gaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgta 211  Q
    ||||||||||||||||| | | | ||||||| |||||| | |||||||| |||||| ||| ||||||||||||    
T  32787548 gaaaatgttaacgagtgccccca-ggcactcattaagacctttaaatgataactttatatgaaaatttgtgta 32787619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 164 - 287
Target Start/End: Complemental strand, 2063590 - 2063468
Alignment:
Q  164 gcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttct 263  Q
    ||||||||||||| |||  |||   |||||||||| |||||||||||||||||| || |||||||||||| | ||| |||| |||||||||||| || ||    
T  2063590 gcactctttaagagcctagaatagtaactttttatgaaaatttgtgtatttaatacattggaaattgaac-tgtttgacttttttaaagaataacttcct 2063492  T
Q  264 aacttagtatgcttaaagagtgtc 287  Q
    || |||| ||||||||||||||||    
T  2063491 aatttagcatgcttaaagagtgtc 2063468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 48098042 - 48097947
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 285  Q
    |||||||||||||||  ||||||||||||| | |||||||||||| |||||||||| |||||||||||||||  ||| |||| || |||||| ||||    
T  48098042 aactttttataaaaacatgtgtatttaatgtattggaaattgaac-tatttaacttttttaaagaataatttcttaatttagaatacttaaaaagtg 48097947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 24546727 - 24546820
Alignment:
Q  192 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgt 286  Q
    ||||||| |||||||||||||||||| || |||||||||||||  || || || ||||||||||||||| |||| |||  |||||||||||||||    
T  24546727 tttttatgaaaatttgtgtatttaatacattggaaattgaactgcttgaa-ttttttaaagaataatttcctaatttaacatgcttaaagagtgt 24546820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 165 - 286
Target Start/End: Original strand, 19597142 - 19597262
Alignment:
Q  165 cactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttcta 264  Q
    |||||||||||   ||||||| | ||| |||||||||||||| |||||| |||||| | |||||||||| ||||| || | ||||||||||||||| |||    
T  19597142 cactctttaagggtcttaaataataacattttataaaaatttatgtattcaatgcattagaaattgaac-tatttgacatttttaaagaataatttccta 19597240  T
Q  265 acttagtatgcttaaagagtgt 286  Q
    |  ||| ||||||||| |||||    
T  19597241 atgtagaatgcttaaaaagtgt 19597262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 313
Target Start/End: Original strand, 49532243 - 49532389
Alignment:
Q  165 cactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttcta 264  Q
    |||||||||||  ||||||||   ||||||| |||||||  ||||||||||||||| ||||||||||| |||||| | || | |||||||||||||  ||    
T  49532243 cactctttaagggccttaaatagtaacttttaataaaaacatgtgtatttaatgcattggaaattgaa-ttatttga-ttttataaagaataatttctta 49532340  T
Q  265 acttagtatgcttaaagagtgtctcgatgacacttgttaacaaaaccct 313  Q
    | || | ||||||| |||||||| ||  | |||| |||||||| |||||    
T  49532341 atttggaatgcttacagagtgtcccgggggcactcgttaacaagaccct 49532389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 52014658 - 52014573
Alignment:
Q  192 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaa 279  Q
    ||||||| ||||||||||||| ||||||| ||||||||| | |||||| |||| ||||| ||||||||| |||| |||| ||||||||    
T  52014658 tttttatgaaaatttgtgtatctaatgcattggaaattgga-ttatttgacttttttaatgaataatttcctaa-ttagaatgcttaa 52014573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 12912862 - 12912950
Alignment:
Q  191 ctttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaa 280  Q
    |||||||||||||||||||||||||||||  | ||||||||| |||||| |||| |||||  ||| |||| |||| |||  |||||||||    
T  12912862 ctttttataaaaatttgtgtatttaatgctttagaaattgaa-ttatttgacttttttaataaatgatttcctaatttaaaatgcttaaa 12912950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 307
Target Start/End: Complemental strand, 9044324 - 9044208
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtct 288  Q
    ||||||||  ||||| ||||||||| |||||  || |||||||||| |||| |||| | |||  ||||||||||||| |||  ||| ||||||| |||||    
T  9044324 aacttttttaaaaaacttgtgtattcaatgctttgcaaattgaact-atttgacttttctaataaataattttctaatttaaaatgtttaaagaatgtct 9044226  T
Q  289 cgatgacacttgttaacaa 307  Q
    ||| |||||| ||||||||    
T  9044225 cga-gacactcgttaacaa 9044208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 53261648 - 53261551
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 287  Q
    |||||||||||||| |||||||| | | |||| |||||||||||    ||||| || ||||||||||||||   ||| |||| ||||||||||||||||    
T  53261648 aactttttataaaagtttgtgtaatcactgcattggaaattgaaaacttttaaatt-tttaaagaataattacttaatttagcatgcttaaagagtgtc 53261551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 51291233 - 51291133
Alignment:
Q  132 tttttaggaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattga 231  Q
    |||||||| ||||||||||||||| | |   |||||||||||||  ||| |||||  ||  |||||| ||| |||||| ||||| |||| ||||||||||    
T  51291233 tttttagggaaatgttaacgagtgccccgggggcactctttaagcacctaaaatggtaagattttatgaaagtttgtgcatttattgcattggaaattga 51291134  T
Q  232 a 232  Q
    |    
T  51291133 a 51291133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 5423752 - 5423854
Alignment:
Q  179 cttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgctta 278  Q
    ||||||||  || ||||||| |||| || ||||||||||||| || |||||||||| ||||||||| |||||||||||||||||||| |||  |||||||    
T  5423752 cttaaatggtaattttttatgaaaacttatgtatttaatgcattgaaaattgaact-atttaacttttttaaagaataattttctaatttaaaatgctta 5423850  T
Q  279 aaga 282  Q
    ||||    
T  5423851 aaga 5423854  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 5250889 - 5251012
Alignment:
Q  161 aaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattt 260  Q
    |||||||||||||||| | | |||| | || ||||||| |||||||||||||||||| || || ||||| ||| | ||| |||| |||||||||||| ||    
T  5250889 aaggcactctttaagagcataaaataataattttttatgaaaatttgtgtatttaatacattgaaaattaaac-tgtttgacttttttaaagaataactt 5250987  T
Q  261 tctaacttagtatgcttaaagagtg 285  Q
     |||| |||||||| ||||||||||    
T  5250988 cctaatttagtatgtttaaagagtg 5251012  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 44442340 - 44442243
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 287  Q
    |||||||||||||||| ||||||||||||| | || ||||||||  ||||| |||| ||||||||||||||| |||| |||  || |||||| ||||||    
T  44442340 aactttttataaaaatatgtgtatttaatgtattgaaaattgaa-atatttgacttttttaaagaataatttcctaatttaaaatacttaaaaagtgtc 44442243  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 284
Target Start/End: Original strand, 46592437 - 46592579
Alignment:
Q  141 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttattta 240  Q
    ||||||||||||||||| |    ||||||||||||| |||  |||   |||||||||| |||| |||| ||||||||  | |||||||| ||||  |||     
T  46592437 aaatgttaacgagtgtccccggagcactctttaagagcctagaatagtaactttttatgaaaacttgtctatttaatatattggaaattaaactg-tttg 46592535  T
Q  241 acttgtttaaagaataattttctaacttagtatgcttaaagagt 284  Q
    |||| |||||||||||| || |||| |||| |||||||||||||    
T  46592536 acttttttaaagaataacttcctaatttagcatgcttaaagagt 46592579  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 1048688 - 1048780
Alignment:
Q  191 ctttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 285  Q
    |||||||| |||| || || ||| || ||| || |||||||||| ||||||||| |||||||||||||||| ||| || ||||||||||||||||    
T  1048688 ctttttatgaaaaattatgcattcaacgcattgaaaattgaact-atttaactt-tttaaagaataattttttaatttggtatgcttaaagagtg 1048780  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 1601020 - 1600951
Alignment:
Q  208 tgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgctta 278  Q
    ||||||||||||| | ||||||||||| ||||||| | |||||||||||||||| ||| |||| |||||||    
T  1601020 tgtatttaatgcatttgaaattgaact-atttaacatttttaaagaataattttgtaatttagaatgctta 1600951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 34596089 - 34596167
Alignment:
Q  141 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgca 220  Q
    ||||||||| |||| |||||||| |||||||||||| | |||||||| |||||||||| ||| | |||||| | ||||||    
T  34596089 aaatgttaatgagt-tctctaagacactctttaagacctttaaatgataactttttatgaaattatgtgtaatcaatgca 34596167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 52076520 - 52076450
Alignment:
Q  142 aatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtat 212  Q
    ||||||||||||||||| | | |||||||||||    ||||||||| |||||||||| |||| ||||||||    
T  52076520 aatgttaacgagtgtctatgaagcactctttaaatgtcttaaatgataactttttatgaaaacttgtgtat 52076450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 26857222 - 26857282
Alignment:
Q  204 tttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaa 265  Q
    ||||| |||| |||||| || ||||| |||| ||||||||| ||||||||||||||||||||    
T  26857222 tttgtatattcaatgcattgaaaattaaact-atttaacttttttaaagaataattttctaa 26857282  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 314
Target Start/End: Original strand, 54290746 - 54290917
Alignment:
Q  141 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttattta 240  Q
    ||||||||||||||| | | | || ||||||||||| ||| |||| | | |||||||| |||| ||||||||||||| || |||||||||||| | |||     
T  54290746 aaatgttaacgagtgccccga-ggtactctttaagagcctaaaataatatctttttatgaaaacttgtgtatttaatacattggaaattgaac-tgtttg 54290843  T
Q  241 acttgtttaaagaataattttctaacttagtatgcttaaagagtgtctcgatgacacttgttaacaaaaccctt 314  Q
    |||| |||||||||||| || |||| |||  |||||||||||||| | ||  || ||| |||||||| ||||||    
T  54290844 acttttttaaagaataacttcctaatttatcatgcttaaagagtgccccggggatactcgttaacaagaccctt 54290917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 11692820 - 11692729
Alignment:
Q  192 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagt 284  Q
    |||||||||||| || |||||||||| || || ||||| |||| |||| |||| |||||||||||||||| ||| ||| ||||||||||||||    
T  11692820 tttttataaaaacttatgtatttaatacattgcaaattaaact-atttcacttttttaaagaataattttttaatttaatatgcttaaagagt 11692729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 43804059 - 43803965
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagt 284  Q
    |||||||||| |||| ||||||||||||| || ||||||||||| || ||| |||| |||||||||||| |||| || |||  |||||||||||||    
T  43804059 aactttttatgaaaacttgtgtatttaatacattggaaattgaa-ttgtttgacttttttaaagaataactttccaatttatcatgcttaaagagt 43803965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 30299396 - 30299300
Alignment:
Q  163 ggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattt 260  Q
    |||||||||||||   ||||||||| |||| |||||  |||||||| ||||||||||| || |||||||| ||| || |||| |||||||||||||||    
T  30299396 ggcactctttaagggtcttaaatgataactatttatgcaaatttgtatatttaatgcattgaaaattgaa-ttacttgacttttttaaagaataattt 30299300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 33072130 - 33072170
Alignment:
Q  192 tttttataaaaatttgtgtatttaatgcaatggaaattgaa 232  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  33072130 tttttataaaaatttgtgtaattaatgcattggaaattgaa 33072170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 39400340 - 39400416
Alignment:
Q  237 tttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtctcgatgacacttgttaacaaaaccct 313  Q
    |||||||||||||||||||||||   ||  ||||||| ||||||||||||| ||  | |||| ||||||||||||||    
T  39400340 tttaacttgtttaaagaataattaattattttagtatacttaaagagtgtcacgggggcactcgttaacaaaaccct 39400416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 49541945 - 49541889
Alignment:
Q  139 gaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaacttttta 197  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| ||||| |||||    
T  49541945 gaaaatgttaacgagtgtctc--agacactctttaagatctttaaataaaaacatttta 49541889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 53040558 - 53040462
Alignment:
Q  190 actttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 287  Q
    ||||||||| ||| |||||||||| ||| || |||||||||||  ||||| | || |||||| ||||||||  ||| |||| || |||||||||||||    
T  53040558 actttttatgaaagtttgtgtattcaatacattggaaattgaa-gtatttgaattttttaaataataatttcttaatttagaatccttaaagagtgtc 53040462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 53766660 - 53766752
Alignment:
Q  140 aaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaa 232  Q
    ||||||||||||||||||||| | | ||||||||||   || |||||  ||  |||||| ||| |||||||||||| |||| || ||||||||    
T  53766660 aaaatgttaacgagtgtctctgatgtactctttaagcatctaaaatggtaatattttatgaaagtttgtgtatttattgcattgaaaattgaa 53766752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 219277 - 219183
Alignment:
Q  192 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 287  Q
    ||||||||||||| | ||||||||||||| |||||||||||| ||||| |||| | ||||||||||||| |||| |||  ||||||||||| ||||    
T  219277 tttttataaaaatatatgtatttaatgcattggaaattgaac-tatttgacttttgtaaagaataatttcctaatttaaaatgcttaaagaatgtc 219183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 16161506 - 16161414
Alignment:
Q  192 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 285  Q
    ||||||||||||| |||||||||||| || || |||||||| ||||||||||| ||| || |||||||| |||| || | ||||||||||||||    
T  16161506 tttttataaaaatatgtgtatttaatccattgaaaattgaa-ttatttaactttttttaaaaataatttcctaatttggaatgcttaaagagtg 16161414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 313
Target Start/End: Original strand, 25437890 - 25438014
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtct 288  Q
    |||||||||| |||| ||||||||||||| || |||||||||||||  || |  || |||||||||||| ||  ||| |||| ||||||||||||||||     
T  25437890 aactttttatgaaaacttgtgtatttaatacattggaaattgaactgtttcactttttttaaagaataacttcttaatttagcatgcttaaagagtgtcc 25437989  T
Q  289 cgatgacacttgttaacaaaaccct 313  Q
    ||  | |||| |||||||| |||||    
T  25437990 cgggggcactcgttaacaagaccct 25438014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 967192 - 967098
Alignment:
Q  189 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagt 284  Q
    ||||||| || ||||||  |||||| |||||| ||||||||||||| |||| | || ||||||||||||| | |||| || |||||||||||||||    
T  967192 aacttttcatgaaaattcatgtattcaatgcattggaaattgaact-atttgaattttttaaagaataatatcctaatttggtatgcttaaagagt 967098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 284
Target Start/End: Original strand, 24040983 - 24041133
Alignment:
Q  132 tttttaggaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattga 231  Q
    |||| ||| |||||||||||||||||| | |  |||| ||||||   |||||||   |||||||||| |||| || ||||||||||| | |||||||| |    
T  24040983 ttttaagggaaatgttaacgagtgtctttgaa-cactttttaagggtcttaaatagtaactttttatgaaaagttatgtatttaatgtattggaaattaa 24041081  T
Q  232 acttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagt 284  Q
    || ||||| | || |||||||||||||||  ||| ||  ||||||||||||||    
T  24041082 ac-tatttgaattttttaaagaataatttcataatttgatatgcttaaagagt 24041133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 4695106 - 4695065
Alignment:
Q  246 tttaaagaataattttctaacttagtatgcttaaagagtgtc 287  Q
    |||||||||||||||| ||| |||| ||||||||||||||||    
T  4695106 tttaaagaataattttttaatttagcatgcttaaagagtgtc 4695065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 14309106 - 14309146
Alignment:
Q  192 tttttataaaaatttgtgtatttaatgcaatggaaattgaa 232  Q
    ||||||| |||||||||||| |||||||| |||||||||||    
T  14309106 tttttatgaaaatttgtgtaattaatgcattggaaattgaa 14309146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 20216 - 20305
Alignment:
Q  141 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattg 230  Q
    ||||||||||||||| ||  | | |||||||||||  | |||||||| || ||||||| |||| |||||||||||||||| | |||||||    
T  20216 aaatgttaacgagtgccttcatgacactctttaagcactttaaatgataagtttttatgaaaagttgtgtatttaatgcatttgaaattg 20305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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