View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2744_high_7 (Length: 275)
Name: NF2744_high_7
Description: NF2744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2744_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 53098584 - 53098374
Alignment:
| Q |
18 |
ttttcatttctcctcttaatcataaatagataaatatcatcaatcgagaaagagaacnnnnnnnnntaaaatacaaaactgtggaattggaatggatgag |
117 |
Q |
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| T |
53098584 |
ttttcatttctcctcttaatcataaatagataaatatcatcaatcgagaaagagaacaaa-------aaaatacaaaactgtggaattggaatggatgag |
53098492 |
T |
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| Q |
118 |
acgaagaaggttattattatctaatggataaaactgtgatgaagaagaagaagaagcgtggtggtgacacaaaacaacaacaacaatctggtattttatt |
217 |
Q |
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| T |
53098491 |
acgaagaaggttattattatcaaatggataaaactgtgatgaa---------gaagcgtggtggtgacacaa---aacaacaacaatctggtattttatt |
53098404 |
T |
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| Q |
218 |
ctaaccctctttcccttgtcgctttcttct |
247 |
Q |
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| T |
53098403 |
ctaaccctctttcccttgtcgctttcttct |
53098374 |
T |
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