View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2744_high_9 (Length: 260)

Name: NF2744_high_9
Description: NF2744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2744_high_9
NF2744_high_9
[»] chr8 (17 HSPs)
chr8 (1-236)||(4736851-4737082)
chr8 (21-236)||(4726295-4726508)
chr8 (1-236)||(4689127-4689356)
chr8 (38-236)||(4681496-4681681)
chr8 (136-238)||(4776432-4776535)
chr8 (171-236)||(4889866-4889931)
chr8 (168-229)||(4703790-4703851)
chr8 (135-238)||(4913365-4913469)
chr8 (141-238)||(21439303-21439401)
chr8 (163-236)||(4924888-4924961)
chr8 (144-236)||(10446871-10446964)
chr8 (141-236)||(4745857-4745953)
chr8 (168-236)||(4996433-4996501)
chr8 (136-223)||(10452532-10452620)
chr8 (169-236)||(4715148-4715215)
chr8 (173-238)||(4904415-4904480)
chr8 (1-97)||(38513520-38513616)
[»] chr1 (2 HSPs)
chr1 (41-100)||(37000724-37000783)
chr1 (38-84)||(39235980-39236026)
[»] chr7 (1 HSPs)
chr7 (41-85)||(3478857-3478901)
[»] chr3 (2 HSPs)
chr3 (64-102)||(34265659-34265697)
chr3 (39-100)||(21777980-21778041)
[»] chr2 (1 HSPs)
chr2 (38-91)||(10954621-10954674)
[»] chr5 (1 HSPs)
chr5 (34-102)||(39971084-39971152)
[»] chr4 (2 HSPs)
chr4 (39-99)||(6381057-6381117)
chr4 (64-100)||(21942999-21943035)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 4737082 - 4736851
Alignment:
Q  1 tagtttatgttttcatcatcgtattctttagaaattacagaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaat 100  Q
    ||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  4737082 tagtttatgttttcatcatagttttctttacaaattacagaaaaatatataagataattaggtgtatgttagtaaagaaataattcatgcaattataaat 4736983  T
Q  101 ataccaagaggatactatatttaaggacggaagaggaggtagtatgtttttcaattaaacaaagggttagcttaccatcatcctgttgagtttctgattg 200  Q
    ||| |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||      
T  4736982 ata-caagaggatactatatttaaggacg---gaggaggtagtatgtttttcaattaaacaaagggctagcttaccatcatcttgttgagtttctgatat 4736887  T
Q  201 tgagaagtcttttactttataaacctcaaaggcatt 236  Q
    |||||||||| ||  ||||||||||||||| |||||    
T  4736886 tgagaagtctctttgtttataaacctcaaaagcatt 4736851  T

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Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 4726508 - 4726295
Alignment:
Q  21 gtattctttagaaattacagaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaatataccaa-gaggatactata 119  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||| ||||||||||| ||| ||||||||||||    
T  4726508 gtattctttacaaattacagaaaaaaatataagataattaggtgtatgttagtaaaggtataattcatgcagttgaaaatatatcaaagaggatactata 4726409  T
Q  120 tttaaggacggaagaggaggtagtatgtttttcaattaaacaaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttacttta 219  Q
    |||||||||| |   |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||| ||||    
T  4726408 tttaaggacgaa---ggaggtagtatgtttttcaattaaacaaagggctagcttaccatcaccctgttgagtttctgaatgcgagaagtcttttagttta 4726312  T
Q  220 taaacctcaaaggcatt 236  Q
    || ||||||||||||||    
T  4726311 tatacctcaaaggcatt 4726295  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 4689356 - 4689127
Alignment:
Q  1 tagtttatgttttcatcatcgtattctttagaaattacagaaaaagatataagataattaggtgtatgttagtaaaga--aataattcatgcaattgaaa 98  Q
    |||||||||||||||||||  ||||| ||  | ||  ||||||||| | ||||||||||||    ||||||||||| |  ||||||| ||||| ||||||    
T  4689356 tagtttatgttttcatcataatattcattgcagatagcagaaaaagttctaagataattag----atgttagtaaaaaataataattaatgcagttgaaa 4689261  T
Q  99 atataccaagaggatactatatttaaggacggaagaggaggtagtatgtttttcaattaaac-aaagggttagcttaccatcatcctgttgagtttctga 197  Q
    ||| | ||||||||| | ||||||| ||     |||| |||||||||||||||||| ||||| |||||| | ||||||||||||| |||| |||||||||    
T  4689260 atagatcaagaggattcaatatttatgg-----agagaaggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctga 4689166  T
Q  198 ttgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    ||||| ||||||  ||||||||||||||||| |||||||    
T  4689165 ttgtgggaagtccattactttataaacctcataggcatt 4689127  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 4681681 - 4681496
Alignment:
Q  38 cagaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaatataccaagaggatactatatttaaggacggaagagga 137  Q
    ||||||||||| ||||||||||| | ||||||| |||||||||||||| ||||| ||||||| ||| ||||||||| || ||||||           |||    
T  4681681 cagaaaaagatgtaagataattaagggtatgttggtaaagaaataattaatgcagttgaaaacatatcaagaggatcctctattta-----------gga 4681593  T
Q  138 ggtagtatgtttttcaattaaacaaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    ||||||||| |||| || || || || |  | ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||    
T  4681592 ggtagtatgcttttaaactacactaaag--tcgcttaccatcatcctgttgagtttctgattgtgagaaattttttactttataaacctcaacggcatt 4681496  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 4776432 - 4776535
Alignment:
Q  136 gaggtagtatgtttttcaattaaac-aaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggca 234  Q
    ||||||||||||||||||| ||||| ||||   |||||||||||||||||||||||||||| ||||||||||||||||| |  |||||| ||||||||||    
T  4776432 gaggtagtatgtttttcaaataaactaaagtcctagcttaccatcatcctgttgagtttctaattgtgagaagtcttttgccatataaatctcaaaggca 4776531  T
Q  235 ttta 238  Q
    ||||    
T  4776532 ttta 4776535  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 4889866 - 4889931
Alignment:
Q  171 cttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4889866 cttaccatcatcctgatgagtttctgattgtgagaagtcttttactttataaatctcaaaggcatt 4889931  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 4703851 - 4703790
Alignment:
Q  168 tagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaa 229  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  4703851 tagcttaccatcatcctgatgagtttctgactgtgagaagtcttttactttataaacctcaa 4703790  T

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Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 4913365 - 4913469
Alignment:
Q  135 ggaggtagtatgtttttcaattaaac-aaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggc 233  Q
    |||||||| ||||||||||  ||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||    | |||| |||||||||    
T  4913365 ggaggtagaatgtttttcagataaactaaagggccagcttaccatcatcctgttgagtttctgattgtgagaagtcttttgacatgtaaatctcaaaggc 4913464  T
Q  234 attta 238  Q
    |||||    
T  4913465 attta 4913469  T

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Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 21439303 - 21439401
Alignment:
Q  141 agtatgtttttcaattaaac-aaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcattta 238  Q
    |||||||||||||| ||||| |||| |  ||||||||||||||||||||||||||||||||||||||| ||||| |  |||||| |||||| |||||||    
T  21439303 agtatgtttttcaaataaactaaagagccagcttaccatcatcctgttgagtttctgattgtgagaagacttttcccatataaatctcaaatgcattta 21439401  T

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Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 4924888 - 4924961
Alignment:
Q  163 agggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    |||| ||||||||||||||| ||||||||||||| |||| |||| | ||||||||||||||||||| |||||||    
T  4924888 agggctagcttaccatcatcttgttgagtttctggttgtaagaattgttttactttataaacctcataggcatt 4924961  T

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Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 10446964 - 10446871
Alignment:
Q  144 atgtttttcaattaaac-aaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    ||||||||||| ||||| |||||| | ||||||||||||| |||| ||||||||  |||||||||||||||||||||||||  |||| ||||||    
T  10446964 atgtttttcaaataaactaaagggcttgcttaccatcatcttgtttagtttctggctgtgagaagtcttttactttataaatttcaatggcatt 10446871  T

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Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 4745953 - 4745857
Alignment:
Q  141 agtatgtttttcaattaaacaaa-gggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    |||||||||||||| ||||| || ||| ||||||| ||||||| |||||||||||||||| |||||||||| |||  | |||||||||| |||||||    
T  4745953 agtatgtttttcaaataaactaatgggctagcttatcatcatcttgttgagtttctgattttgagaagtctcttagctaataaacctcataggcatt 4745857  T

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Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 4996501 - 4996433
Alignment:
Q  168 tagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    |||||||||||||||| | | |||||||||||||||||||| ||||||||||||||  |||||||||||    
T  4996501 tagcttaccatcatcccgatcagtttctgattgtgagaagttttttactttataaatttcaaaggcatt 4996433  T

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Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 10452620 - 10452532
Alignment:
Q  136 gaggtagtatgtttttcaattaaac-aaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaa 223  Q
    |||||| |||||||||||| ||||| |||||| |  |||||||||||| ||||  ||||||| || |||||||||||||||||||||||    
T  10452620 gaggtaatatgtttttcaaataaactaaagggcttacttaccatcatcttgttctgtttctggttttgagaagtcttttactttataaa 10452532  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 4715215 - 4715148
Alignment:
Q  169 agcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    ||||||||||||||||| ||||||||  |||| |||||   ||||||||||||||||||| |||||||    
T  4715215 agcttaccatcatcctgatgagtttccaattgcgagaaaagttttactttataaacctcataggcatt 4715148  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 4904415 - 4904480
Alignment:
Q  173 taccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcattta 238  Q
    |||||||||| || | |||||||||||||  |||||||||| | || |||| ||||||||||||||    
T  4904415 taccatcatcttgatcagtttctgattgtatgaagtcttttgccttgtaaatctcaaaggcattta 4904480  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 38513520 - 38513616
Alignment:
Q  1 tagtttatgttttcatcatcgtattctttagaaattacagaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaa 97  Q
    ||||| ||||||||||||  |||||  | ||| ||| ||||||||||| ||| || |||  | ||||||| |||||||||||||| ||||| |||||    
T  38513520 tagttaatgttttcatcaaggtatttatcagagattgcagaaaaagatgtaacattatttagagtatgttggtaaagaaataattaatgcagttgaa 38513616  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 37000783 - 37000724
Alignment:
Q  41 aaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaat 100  Q
    |||||||| ||| ||||||||| ||||||| |||||||||||||| ||||| ||||||||    
T  37000783 aaaaagatgtaaaataattaggggtatgtttgtaaagaaataattaatgcacttgaaaat 37000724  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 39235980 - 39236026
Alignment:
Q  38 cagaaaaagatataagataattaggtgtatgttagtaaagaaataat 84  Q
    ||||||||||| ||| ||||||||| ||||||| |||||||||||||    
T  39235980 cagaaaaagatgtaatataattaggagtatgttggtaaagaaataat 39236026  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 3478857 - 3478901
Alignment:
Q  41 aaaaagatataagataattaggtgtatgttagtaaagaaataatt 85  Q
    |||||||||||| |||| |||| ||||||||||||||||||||||    
T  3478857 aaaaagatataaaataaataggggtatgttagtaaagaaataatt 3478901  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 34265659 - 34265697
Alignment:
Q  64 gtatgttagtaaagaaataattcatgcaattgaaaatat 102  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  34265659 gtatgttagtaaagaaataattaatgtaattgaaaatat 34265697  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 21777980 - 21778041
Alignment:
Q  39 agaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaat 100  Q
    ||||||||||  || ||||||||  |||||||||||||||||||||| ||| | ||||||||    
T  21777980 agaaaaagatgcaacataattagaggtatgttagtaaagaaataattaatgaagttgaaaat 21778041  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 10954621 - 10954674
Alignment:
Q  38 cagaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgca 91  Q
    ||||||||||| |||  |||||||| ||||||| |||||||||||||| |||||    
T  10954621 cagaaaaagatgtaatttaattaggcgtatgttggtaaagaaataattaatgca 10954674  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 39971152 - 39971084
Alignment:
Q  34 attacagaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaatat 102  Q
    |||| ||||||||||  || ||||||| | ||||||| |||||||||||||| ||| | ||||||||||    
T  39971152 attaaagaaaaagatgcaaaataattaagggtatgttggtaaagaaataattaatgtacttgaaaatat 39971084  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 6381117 - 6381057
Alignment:
Q  39 agaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaa 99  Q
    |||||||||| ||| |||| || | ||||||||||||||||||| || |||||||| ||||    
T  6381117 agaaaaagatgtaaaataaatacgagtatgttagtaaagaaatagtttatgcaattaaaaa 6381057  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 21943035 - 21942999
Alignment:
Q  64 gtatgttagtaaagaaataattcatgcaattgaaaat 100  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  21943035 gtatgttagtaaagaaataattaatgcacttgaaaat 21942999  T

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