View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2744_low_1 (Length: 798)
Name: NF2744_low_1
Description: NF2744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2744_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 108 - 787
Target Start/End: Complemental strand, 7301023 - 7300359
Alignment:
| Q |
108 |
gtgggttgatacagaggggtaataatgtaatgtaatgatggaaatggtgaagatcaaatataggttgattttgatcaaagtgattatagttaatccagtt |
207 |
Q |
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| T |
7301023 |
gtgggttgatacagaggggtaataatgtaatgtaatgatggaaatggtgaagatcaaatataggttgattttgatcaaagtgattat------------- |
7300937 |
T |
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| Q |
208 |
atttggaaactgataatctttttatgattatttctcgnnnnnnncttccacaggaaaatgaaacattgttgtttcgagaaaagtgttaaaggactgctaa |
307 |
Q |
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| T |
7300936 |
--ttggaaactgataatctttttatgattatttctcgtttttttcttccacaggaaaatgaaacattgttgtttcgagaaaagtgttaaaggactgctaa |
7300839 |
T |
|
| Q |
308 |
aagcccatcagagctttcattcgtcaatatcattcattcaactagcccttaattatttttagtctaggattagattaaattagaatagaaaatgctaagt |
407 |
Q |
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| T |
7300838 |
aagcccaccagagctttcattcatcaatatcattcattcaactagcccttaattatttttagtctaggattagattaaattagaatagaaaatgctaagt |
7300739 |
T |
|
| Q |
408 |
ataaaattaattagtaccattaattgaaagttagggagtcctagattcaatcaaaggaggattcacaattgggattttattttccaatcctctcttggtt |
507 |
Q |
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| T |
7300738 |
ataaaattaattagtaccattaattgaaagttagggagtcctagattcaatcaaatgaggattcacaattgggattttattttccaatcctctcttggtt |
7300639 |
T |
|
| Q |
508 |
aagcattttatgaatatacattgtcgtgtgccttaggttagacatgcgtctttggattgacagtgagtttgatgaaattatggtgtgccagcgtgatttt |
607 |
Q |
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| T |
7300638 |
aagcattttatgaatatacattgtcgtgtgccttaggttagacatgcgtctttggattgacagtgagtttgatgaaattatggtgtgccagcgtgatttt |
7300539 |
T |
|
| Q |
608 |
gacaaaagttactttggaagcgatttcgttaaactcgctgttcatctaaacatacacctggtggttcataggttttagtaaaattgttctcatatatgtc |
707 |
Q |
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| T |
7300538 |
gacaaaagttactttggaagcgatttcgttaaactcgctgttcatctaaacatacacctggtggttcataggttttagtaaaattgttctcatatatgtc |
7300439 |
T |
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| Q |
708 |
ccttttaggtataattgtgaagtgtttcaatttcacaataagtttgtgtcattcctagaagaaaaaccaaaagtagatag |
787 |
Q |
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| T |
7300438 |
ccttttaggtatagttgtgaagtctttcaatttcacaataagtttgtgtcattcctagaagaaaaaccaaaagtagatag |
7300359 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 606
Target Start/End: Complemental strand, 42657591 - 42657541
Alignment:
| Q |
556 |
tctttggattgacagtgagtttgatgaaattatggtgtgccagcgtgattt |
606 |
Q |
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| T |
42657591 |
tctttggattgacaatgagtttgatgaaattacggtgtgccattgtgattt |
42657541 |
T |
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